Hb_034482_020

Information

Type -
Description -
Location Contig34482: 9459-21332
Sequence    

Annotation

kegg
ID rcu:RCOM_0742100
description aspartate kinase, putative (EC:2.7.2.4 1.1.1.3)
nr
ID XP_012077016.1
description PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
swissprot
ID P37142
description Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment) OS=Daucus carota PE=1 SV=1
trembl
ID A0A067LED5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17215 PE=4 SV=1
Gene Ontology
ID GO:0004072
description bifunctional aspartokinase homoserine dehydrogenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35960: 9398-21275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034482_020 0.0 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
2 Hb_002028_150 0.1033658544 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
3 Hb_000976_430 0.1042160089 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
4 Hb_004116_140 0.1061472253 - - nuclear transcription factor, X-box binding, putative [Ricinus communis]
5 Hb_002374_100 0.1081836878 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
6 Hb_000621_070 0.1167258509 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
7 Hb_000815_070 0.125016238 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
8 Hb_005183_120 0.1278943779 - - protein translocase, putative [Ricinus communis]
9 Hb_001818_090 0.1286177597 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001014_040 0.1309370625 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
11 Hb_002835_040 0.1310568133 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
12 Hb_000028_590 0.1313744464 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
13 Hb_000676_150 0.1329717166 - - 50S ribosomal protein L7/L12, putative [Ricinus communis]
14 Hb_003813_030 0.134434731 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
15 Hb_000468_060 0.1351671809 - - ku P70 DNA helicase, putative [Ricinus communis]
16 Hb_004907_080 0.136799409 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000025_210 0.137183949 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
18 Hb_003922_010 0.1376749953 - - PREDICTED: probable phospholipid hydroperoxide glutathione peroxidase [Jatropha curcas]
19 Hb_004070_020 0.1381443315 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
20 Hb_000482_090 0.1382281157 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]

Gene co-expression network

sample Hb_034482_020 Hb_034482_020 Hb_002028_150 Hb_002028_150 Hb_034482_020--Hb_002028_150 Hb_000976_430 Hb_000976_430 Hb_034482_020--Hb_000976_430 Hb_004116_140 Hb_004116_140 Hb_034482_020--Hb_004116_140 Hb_002374_100 Hb_002374_100 Hb_034482_020--Hb_002374_100 Hb_000621_070 Hb_000621_070 Hb_034482_020--Hb_000621_070 Hb_000815_070 Hb_000815_070 Hb_034482_020--Hb_000815_070 Hb_002028_150--Hb_000976_430 Hb_000207_050 Hb_000207_050 Hb_002028_150--Hb_000207_050 Hb_130279_010 Hb_130279_010 Hb_002028_150--Hb_130279_010 Hb_002028_150--Hb_002374_100 Hb_001205_120 Hb_001205_120 Hb_002028_150--Hb_001205_120 Hb_000504_140 Hb_000504_140 Hb_000976_430--Hb_000504_140 Hb_000976_430--Hb_002374_100 Hb_002499_040 Hb_002499_040 Hb_000976_430--Hb_002499_040 Hb_001818_090 Hb_001818_090 Hb_000976_430--Hb_001818_090 Hb_005539_280 Hb_005539_280 Hb_000976_430--Hb_005539_280 Hb_001221_210 Hb_001221_210 Hb_000976_430--Hb_001221_210 Hb_005183_120 Hb_005183_120 Hb_004116_140--Hb_005183_120 Hb_000143_030 Hb_000143_030 Hb_004116_140--Hb_000143_030 Hb_000676_150 Hb_000676_150 Hb_004116_140--Hb_000676_150 Hb_000482_090 Hb_000482_090 Hb_004116_140--Hb_000482_090 Hb_024185_020 Hb_024185_020 Hb_004116_140--Hb_024185_020 Hb_010422_060 Hb_010422_060 Hb_002374_100--Hb_010422_060 Hb_001014_040 Hb_001014_040 Hb_002374_100--Hb_001014_040 Hb_022181_020 Hb_022181_020 Hb_002374_100--Hb_022181_020 Hb_002374_100--Hb_005183_120 Hb_000010_460 Hb_000010_460 Hb_002374_100--Hb_000010_460 Hb_004837_270 Hb_004837_270 Hb_000621_070--Hb_004837_270 Hb_001348_170 Hb_001348_170 Hb_000621_070--Hb_001348_170 Hb_002631_030 Hb_002631_030 Hb_000621_070--Hb_002631_030 Hb_001629_080 Hb_001629_080 Hb_000621_070--Hb_001629_080 Hb_000174_210 Hb_000174_210 Hb_000621_070--Hb_000174_210 Hb_000329_320 Hb_000329_320 Hb_000815_070--Hb_000329_320 Hb_000985_030 Hb_000985_030 Hb_000815_070--Hb_000985_030 Hb_011716_130 Hb_011716_130 Hb_000815_070--Hb_011716_130 Hb_002600_090 Hb_002600_090 Hb_000815_070--Hb_002600_090 Hb_032264_070 Hb_032264_070 Hb_000815_070--Hb_032264_070 Hb_001489_080 Hb_001489_080 Hb_000815_070--Hb_001489_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.45401 1.23609 8.44491 3.87168 7.71927 7.03887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4111 6.61111 12.5166 8.77341 3.90896

CAGE analysis