Hb_034482_040

Information

Type -
Description -
Location Contig34482: 50122-54733
Sequence    

Annotation

kegg
ID egr:104419106
description aspartokinase 2, chloroplastic-like
nr
ID WP_038421247.1
description aspartate kinase, partial [Francisella tularensis]
swissprot
ID Q9S702
description Aspartokinase 3, chloroplastic OS=Arabidopsis thaliana GN=AK3 PE=1 SV=1
trembl
ID D7DTR1
description Aspartokinase OS=Methanococcus voltae (strain ATCC BAA-1334 / A3) GN=Mvol_0862 PE=3 SV=1
Gene Ontology
ID GO:0004072
description bifunctional aspartokinase homoserine dehydrogenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034482_040 0.0 - - aspartate kinase, partial [Francisella tularensis]
2 Hb_002989_040 0.1063613488 - - hypothetical protein 1 [Hevea brasiliensis]
3 Hb_003226_240 0.1124343698 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
4 Hb_001433_100 0.1171594678 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
5 Hb_023051_020 0.1258943118 - - -
6 Hb_032202_250 0.140875067 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
7 Hb_141194_010 0.1435301934 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
8 Hb_001425_070 0.1481561925 - - -
9 Hb_001143_070 0.1644455097 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
10 Hb_091433_030 0.1652600639 - - -
11 Hb_000103_030 0.1730531824 - - hypothetical protein VITISV_021700 [Vitis vinifera]
12 Hb_000258_180 0.1734641119 - - PREDICTED: glutathione S-transferase U10-like [Vitis vinifera]
13 Hb_000300_210 0.1765157594 - - gd2b, putative [Ricinus communis]
14 Hb_000920_320 0.1789011652 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
15 Hb_012022_100 0.1847960038 - - CPRD49 family protein [Populus trichocarpa]
16 Hb_003060_040 0.1866196484 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
17 Hb_000012_070 0.1879708783 - - cytochrome P450, putative [Ricinus communis]
18 Hb_001425_060 0.1945975295 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000264_130 0.1983062623 - - PREDICTED: uncharacterized protein LOC103870402 [Brassica rapa]
20 Hb_001186_070 0.1994036859 - - PREDICTED: F-box protein FBW2-like [Gossypium raimondii]

Gene co-expression network

sample Hb_034482_040 Hb_034482_040 Hb_002989_040 Hb_002989_040 Hb_034482_040--Hb_002989_040 Hb_003226_240 Hb_003226_240 Hb_034482_040--Hb_003226_240 Hb_001433_100 Hb_001433_100 Hb_034482_040--Hb_001433_100 Hb_023051_020 Hb_023051_020 Hb_034482_040--Hb_023051_020 Hb_032202_250 Hb_032202_250 Hb_034482_040--Hb_032202_250 Hb_141194_010 Hb_141194_010 Hb_034482_040--Hb_141194_010 Hb_002989_040--Hb_023051_020 Hb_002989_040--Hb_003226_240 Hb_001143_070 Hb_001143_070 Hb_002989_040--Hb_001143_070 Hb_000103_030 Hb_000103_030 Hb_002989_040--Hb_000103_030 Hb_000920_320 Hb_000920_320 Hb_002989_040--Hb_000920_320 Hb_003226_240--Hb_001433_100 Hb_003226_240--Hb_023051_020 Hb_003226_240--Hb_000920_320 Hb_003226_240--Hb_032202_250 Hb_000300_210 Hb_000300_210 Hb_001433_100--Hb_000300_210 Hb_001433_100--Hb_032202_250 Hb_008066_030 Hb_008066_030 Hb_001433_100--Hb_008066_030 Hb_000329_660 Hb_000329_660 Hb_001433_100--Hb_000329_660 Hb_113635_010 Hb_113635_010 Hb_023051_020--Hb_113635_010 Hb_001425_070 Hb_001425_070 Hb_023051_020--Hb_001425_070 Hb_091433_030 Hb_091433_030 Hb_023051_020--Hb_091433_030 Hb_001842_080 Hb_001842_080 Hb_032202_250--Hb_001842_080 Hb_032202_250--Hb_000300_210 Hb_032202_250--Hb_002989_040 Hb_000045_210 Hb_000045_210 Hb_141194_010--Hb_000045_210 Hb_003007_010 Hb_003007_010 Hb_141194_010--Hb_003007_010 Hb_141194_010--Hb_003226_240 Hb_141194_010--Hb_001143_070 Hb_000592_060 Hb_000592_060 Hb_141194_010--Hb_000592_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0265484 0.0117679 0.0908848 0.106283 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.80256 7.01782 1.84077 0.245025 0

CAGE analysis