Hb_034507_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig34507: 27345-29746
Sequence    

Annotation

kegg
ID rcu:RCOM_0213970
description DNA binding protein, putative
nr
ID AAU06309.1
description MYB transcription factor [Hevea brasiliensis]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID Q66RN1
description MYB transcription factor OS=Hevea brasiliensis GN=MYB PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor divaricata-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36052: 28895-29641
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034507_010 0.0 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
2 Hb_007590_100 0.1454855319 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
3 Hb_001976_020 0.156818783 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000227_280 0.1569546979 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
5 Hb_007894_070 0.1589050781 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
6 Hb_006414_010 0.1616022439 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
7 Hb_000800_010 0.1625590901 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
8 Hb_011360_110 0.1631500875 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
9 Hb_010968_030 0.1652803735 - - PREDICTED: uncharacterized protein LOC105643149 [Jatropha curcas]
10 Hb_003001_130 0.1689821011 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004241_110 0.1697000579 - - Minor allergen Alt a, putative [Ricinus communis]
12 Hb_000941_120 0.1704951278 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
13 Hb_001353_020 0.171583835 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005489_150 0.1744812478 - - hypothetical protein JCGZ_20759 [Jatropha curcas]
15 Hb_007027_010 0.1759346982 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
16 Hb_003470_110 0.1765141271 - - unnamed protein product [Vitis vinifera]
17 Hb_009222_080 0.1788060372 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
18 Hb_004462_030 0.1791432255 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
19 Hb_005539_140 0.1803184792 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
20 Hb_187959_010 0.1818349947 - - hypothetical protein JCGZ_12266 [Jatropha curcas]

Gene co-expression network

sample Hb_034507_010 Hb_034507_010 Hb_007590_100 Hb_007590_100 Hb_034507_010--Hb_007590_100 Hb_001976_020 Hb_001976_020 Hb_034507_010--Hb_001976_020 Hb_000227_280 Hb_000227_280 Hb_034507_010--Hb_000227_280 Hb_007894_070 Hb_007894_070 Hb_034507_010--Hb_007894_070 Hb_006414_010 Hb_006414_010 Hb_034507_010--Hb_006414_010 Hb_000800_010 Hb_000800_010 Hb_034507_010--Hb_000800_010 Hb_006615_230 Hb_006615_230 Hb_007590_100--Hb_006615_230 Hb_187959_010 Hb_187959_010 Hb_007590_100--Hb_187959_010 Hb_002495_030 Hb_002495_030 Hb_007590_100--Hb_002495_030 Hb_004032_110 Hb_004032_110 Hb_007590_100--Hb_004032_110 Hb_003052_080 Hb_003052_080 Hb_007590_100--Hb_003052_080 Hb_098795_030 Hb_098795_030 Hb_007590_100--Hb_098795_030 Hb_000979_160 Hb_000979_160 Hb_001976_020--Hb_000979_160 Hb_002097_080 Hb_002097_080 Hb_001976_020--Hb_002097_080 Hb_001976_020--Hb_098795_030 Hb_002685_220 Hb_002685_220 Hb_001976_020--Hb_002685_220 Hb_000959_120 Hb_000959_120 Hb_001976_020--Hb_000959_120 Hb_001976_020--Hb_007590_100 Hb_005488_130 Hb_005488_130 Hb_000227_280--Hb_005488_130 Hb_000227_280--Hb_007894_070 Hb_003001_130 Hb_003001_130 Hb_000227_280--Hb_003001_130 Hb_000283_140 Hb_000283_140 Hb_000227_280--Hb_000283_140 Hb_000028_430 Hb_000028_430 Hb_000227_280--Hb_000028_430 Hb_004241_110 Hb_004241_110 Hb_000227_280--Hb_004241_110 Hb_007894_070--Hb_006414_010 Hb_000210_040 Hb_000210_040 Hb_007894_070--Hb_000210_040 Hb_000659_040 Hb_000659_040 Hb_007894_070--Hb_000659_040 Hb_007894_070--Hb_004241_110 Hb_001318_100 Hb_001318_100 Hb_007894_070--Hb_001318_100 Hb_001486_100 Hb_001486_100 Hb_006414_010--Hb_001486_100 Hb_006414_010--Hb_000800_010 Hb_006414_010--Hb_000210_040 Hb_002740_100 Hb_002740_100 Hb_006414_010--Hb_002740_100 Hb_006414_010--Hb_000659_040 Hb_000416_060 Hb_000416_060 Hb_000800_010--Hb_000416_060 Hb_005588_120 Hb_005588_120 Hb_000800_010--Hb_005588_120 Hb_004129_010 Hb_004129_010 Hb_000800_010--Hb_004129_010 Hb_001699_170 Hb_001699_170 Hb_000800_010--Hb_001699_170 Hb_132840_030 Hb_132840_030 Hb_000800_010--Hb_132840_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0408861 3.83559 2.1117 8.84796 0.0837623 0.0807926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.262945 0.499995 1.66861 2.40702 5.72502

CAGE analysis