Hb_034507_060

Information

Type -
Description -
Location Contig34507: 109344-111326
Sequence    

Annotation

kegg
ID cit:102611690
description UPF0503 protein At3g09070, chloroplastic-like
nr
ID XP_006480961.1
description PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
swissprot
ID -
description -
trembl
ID V4SPB0
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011239mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36061: 109132-111390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034507_060 0.0 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
2 Hb_023226_030 0.0877432823 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Jatropha curcas]
3 Hb_012760_090 0.0920348498 - - Aspartic proteinase-like protein 1 [Morus notabilis]
4 Hb_005694_180 0.1055078664 - - PREDICTED: cytochrome b5 [Jatropha curcas]
5 Hb_003710_020 0.1067563656 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
6 Hb_004218_130 0.1090809953 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
7 Hb_010050_020 0.109549139 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
8 Hb_172706_020 0.1104367638 - - PREDICTED: protein ABIL2 [Jatropha curcas]
9 Hb_003430_080 0.110477443 - - zinc finger protein, putative [Ricinus communis]
10 Hb_004522_030 0.1125544984 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
11 Hb_000309_030 0.1148579409 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
12 Hb_001545_130 0.1152726177 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
13 Hb_001195_420 0.1193633476 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
14 Hb_000062_530 0.1233396336 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
15 Hb_000116_240 0.1243827432 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
16 Hb_000740_090 0.1256982196 - - conserved hypothetical protein [Ricinus communis]
17 Hb_143766_080 0.1295630147 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
18 Hb_001221_390 0.1303881633 - - Phospholipase C 4 precursor, putative [Ricinus communis]
19 Hb_000203_070 0.1325565997 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
20 Hb_002641_160 0.1328995833 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_034507_060 Hb_034507_060 Hb_023226_030 Hb_023226_030 Hb_034507_060--Hb_023226_030 Hb_012760_090 Hb_012760_090 Hb_034507_060--Hb_012760_090 Hb_005694_180 Hb_005694_180 Hb_034507_060--Hb_005694_180 Hb_003710_020 Hb_003710_020 Hb_034507_060--Hb_003710_020 Hb_004218_130 Hb_004218_130 Hb_034507_060--Hb_004218_130 Hb_010050_020 Hb_010050_020 Hb_034507_060--Hb_010050_020 Hb_003430_080 Hb_003430_080 Hb_023226_030--Hb_003430_080 Hb_172706_020 Hb_172706_020 Hb_023226_030--Hb_172706_020 Hb_023226_030--Hb_005694_180 Hb_000309_030 Hb_000309_030 Hb_023226_030--Hb_000309_030 Hb_001195_420 Hb_001195_420 Hb_023226_030--Hb_001195_420 Hb_002641_160 Hb_002641_160 Hb_012760_090--Hb_002641_160 Hb_012760_090--Hb_010050_020 Hb_005333_080 Hb_005333_080 Hb_012760_090--Hb_005333_080 Hb_012760_090--Hb_004218_130 Hb_000318_170 Hb_000318_170 Hb_012760_090--Hb_000318_170 Hb_005694_180--Hb_003430_080 Hb_005694_180--Hb_001195_420 Hb_005694_180--Hb_000309_030 Hb_005694_180--Hb_012760_090 Hb_143766_080 Hb_143766_080 Hb_003710_020--Hb_143766_080 Hb_080477_080 Hb_080477_080 Hb_003710_020--Hb_080477_080 Hb_000062_530 Hb_000062_530 Hb_003710_020--Hb_000062_530 Hb_001545_130 Hb_001545_130 Hb_003710_020--Hb_001545_130 Hb_004522_030 Hb_004522_030 Hb_003710_020--Hb_004522_030 Hb_000098_180 Hb_000098_180 Hb_004218_130--Hb_000098_180 Hb_004218_130--Hb_001545_130 Hb_018845_010 Hb_018845_010 Hb_004218_130--Hb_018845_010 Hb_003929_180 Hb_003929_180 Hb_004218_130--Hb_003929_180 Hb_000000_480 Hb_000000_480 Hb_004218_130--Hb_000000_480 Hb_002739_120 Hb_002739_120 Hb_004218_130--Hb_002739_120 Hb_001221_390 Hb_001221_390 Hb_010050_020--Hb_001221_390 Hb_000622_330 Hb_000622_330 Hb_010050_020--Hb_000622_330 Hb_010050_020--Hb_002641_160 Hb_010050_020--Hb_004522_030 Hb_000012_400 Hb_000012_400 Hb_010050_020--Hb_000012_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.416642 1.14443 1.88603 2.9219 0.145344 0.257927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136699 0.268896 0.237904 1.47643 0.946886

CAGE analysis