Hb_034507_090

Information

Type -
Description -
Location Contig34507: 154001-155983
Sequence    

Annotation

kegg
ID pop:POPTR_0016s11900g
description POPTRDRAFT_1104183; hypothetical protein
nr
ID XP_012087910.1
description PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
swissprot
ID Q9SS80
description UPF0503 protein At3g09070, chloroplastic OS=Arabidopsis thaliana GN=At3g09070 PE=1 SV=1
trembl
ID A0A067JY59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25053 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36062: 153788-156047
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034507_090 0.0 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
2 Hb_000563_630 0.0816823081 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
3 Hb_001493_140 0.0906396657 - - hypothetical protein PHAVU_010G123100g [Phaseolus vulgaris]
4 Hb_000742_130 0.1197541962 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
5 Hb_016564_060 0.1281516118 - - PREDICTED: uncharacterized protein LOC105628249 [Jatropha curcas]
6 Hb_000210_160 0.1286488898 - - PREDICTED: protein YLS9-like [Jatropha curcas]
7 Hb_000645_160 0.1293250262 - - protein translocase, putative [Ricinus communis]
8 Hb_035995_010 0.130532536 - - -
9 Hb_001318_100 0.1344829677 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
10 Hb_001675_310 0.1383031009 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
11 Hb_002999_080 0.1388933757 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
12 Hb_002518_220 0.141130593 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
13 Hb_003929_230 0.1426798626 - - PREDICTED: S-adenosylmethionine synthase 5 [Nelumbo nucifera]
14 Hb_155444_010 0.1435712268 - - -
15 Hb_012395_050 0.1471008313 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
16 Hb_006120_210 0.1472839487 - - gibberellin 20-oxidase, putative [Ricinus communis]
17 Hb_000098_260 0.1504852969 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
18 Hb_000997_240 0.1509744842 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
19 Hb_001054_040 0.1517369597 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
20 Hb_002000_090 0.1548572454 - - 60S ribosomal protein L3B [Hevea brasiliensis]

Gene co-expression network

sample Hb_034507_090 Hb_034507_090 Hb_000563_630 Hb_000563_630 Hb_034507_090--Hb_000563_630 Hb_001493_140 Hb_001493_140 Hb_034507_090--Hb_001493_140 Hb_000742_130 Hb_000742_130 Hb_034507_090--Hb_000742_130 Hb_016564_060 Hb_016564_060 Hb_034507_090--Hb_016564_060 Hb_000210_160 Hb_000210_160 Hb_034507_090--Hb_000210_160 Hb_000645_160 Hb_000645_160 Hb_034507_090--Hb_000645_160 Hb_000563_630--Hb_000210_160 Hb_000563_630--Hb_000742_130 Hb_006120_210 Hb_006120_210 Hb_000563_630--Hb_006120_210 Hb_002888_100 Hb_002888_100 Hb_000563_630--Hb_002888_100 Hb_003849_200 Hb_003849_200 Hb_000563_630--Hb_003849_200 Hb_001493_140--Hb_000563_630 Hb_001493_140--Hb_000645_160 Hb_000997_240 Hb_000997_240 Hb_001493_140--Hb_000997_240 Hb_001493_140--Hb_000742_130 Hb_002999_080 Hb_002999_080 Hb_001493_140--Hb_002999_080 Hb_000742_130--Hb_000645_160 Hb_002518_220 Hb_002518_220 Hb_000742_130--Hb_002518_220 Hb_000098_260 Hb_000098_260 Hb_000742_130--Hb_000098_260 Hb_000742_130--Hb_006120_210 Hb_092975_010 Hb_092975_010 Hb_000742_130--Hb_092975_010 Hb_000329_720 Hb_000329_720 Hb_000742_130--Hb_000329_720 Hb_001048_070 Hb_001048_070 Hb_016564_060--Hb_001048_070 Hb_016564_060--Hb_003849_200 Hb_002811_110 Hb_002811_110 Hb_016564_060--Hb_002811_110 Hb_000162_070 Hb_000162_070 Hb_016564_060--Hb_000162_070 Hb_016564_060--Hb_000563_630 Hb_001675_310 Hb_001675_310 Hb_000210_160--Hb_001675_310 Hb_000210_160--Hb_003849_200 Hb_003435_040 Hb_003435_040 Hb_000210_160--Hb_003435_040 Hb_000152_170 Hb_000152_170 Hb_000210_160--Hb_000152_170 Hb_032920_030 Hb_032920_030 Hb_000645_160--Hb_032920_030 Hb_001936_180 Hb_001936_180 Hb_000645_160--Hb_001936_180 Hb_000645_160--Hb_000098_260 Hb_001138_070 Hb_001138_070 Hb_000645_160--Hb_001138_070 Hb_149055_010 Hb_149055_010 Hb_000645_160--Hb_149055_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0950332 1.13935 1.40332 2.94582 0 0.0438649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0227832 0.0537792 0.101959 0.591998 0.795384

CAGE analysis