Hb_034552_020

Information

Type -
Description -
Location Contig34552: 5401-7193
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034552_020 0.0 - - -
2 Hb_000671_110 0.1082871517 - - hypothetical protein JCGZ_23794 [Jatropha curcas]
3 Hb_000208_210 0.1106326921 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
4 Hb_001025_080 0.1194984231 - - hypothetical protein JCGZ_11431 [Jatropha curcas]
5 Hb_011139_030 0.1248550282 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
6 Hb_001752_030 0.126193472 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
7 Hb_000592_080 0.1264340143 - - PREDICTED: thymidylate kinase [Jatropha curcas]
8 Hb_000951_110 0.1293701924 - - heat shock protein, putative [Ricinus communis]
9 Hb_004102_140 0.1326230177 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002508_020 0.1350065613 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
11 Hb_004096_100 0.135504776 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
12 Hb_000173_510 0.1396515344 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
13 Hb_001488_410 0.1442830657 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
14 Hb_032278_020 0.1466196282 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
15 Hb_001493_030 0.1470333136 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
16 Hb_143395_010 0.1470753573 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
17 Hb_003126_100 0.1475217866 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
18 Hb_004209_020 0.1479307782 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
19 Hb_001484_120 0.1479749443 - - hypothetical protein POPTR_2287s00200g, partial [Populus trichocarpa]
20 Hb_000832_090 0.1480379779 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]

Gene co-expression network

sample Hb_034552_020 Hb_034552_020 Hb_000671_110 Hb_000671_110 Hb_034552_020--Hb_000671_110 Hb_000208_210 Hb_000208_210 Hb_034552_020--Hb_000208_210 Hb_001025_080 Hb_001025_080 Hb_034552_020--Hb_001025_080 Hb_011139_030 Hb_011139_030 Hb_034552_020--Hb_011139_030 Hb_001752_030 Hb_001752_030 Hb_034552_020--Hb_001752_030 Hb_000592_080 Hb_000592_080 Hb_034552_020--Hb_000592_080 Hb_002301_260 Hb_002301_260 Hb_000671_110--Hb_002301_260 Hb_004096_100 Hb_004096_100 Hb_000671_110--Hb_004096_100 Hb_000951_110 Hb_000951_110 Hb_000671_110--Hb_000951_110 Hb_000671_110--Hb_001025_080 Hb_002903_080 Hb_002903_080 Hb_000671_110--Hb_002903_080 Hb_020665_030 Hb_020665_030 Hb_000671_110--Hb_020665_030 Hb_000138_140 Hb_000138_140 Hb_000208_210--Hb_000138_140 Hb_019654_040 Hb_019654_040 Hb_000208_210--Hb_019654_040 Hb_003549_090 Hb_003549_090 Hb_000208_210--Hb_003549_090 Hb_001488_410 Hb_001488_410 Hb_000208_210--Hb_001488_410 Hb_004994_040 Hb_004994_040 Hb_000208_210--Hb_004994_040 Hb_001269_230 Hb_001269_230 Hb_000208_210--Hb_001269_230 Hb_000785_040 Hb_000785_040 Hb_001025_080--Hb_000785_040 Hb_001025_080--Hb_004096_100 Hb_004102_140 Hb_004102_140 Hb_001025_080--Hb_004102_140 Hb_000007_280 Hb_000007_280 Hb_001025_080--Hb_000007_280 Hb_001473_090 Hb_001473_090 Hb_001025_080--Hb_001473_090 Hb_003044_020 Hb_003044_020 Hb_001025_080--Hb_003044_020 Hb_000618_030 Hb_000618_030 Hb_011139_030--Hb_000618_030 Hb_000820_170 Hb_000820_170 Hb_011139_030--Hb_000820_170 Hb_000025_110 Hb_000025_110 Hb_011139_030--Hb_000025_110 Hb_048937_040 Hb_048937_040 Hb_011139_030--Hb_048937_040 Hb_001675_180 Hb_001675_180 Hb_011139_030--Hb_001675_180 Hb_006064_010 Hb_006064_010 Hb_011139_030--Hb_006064_010 Hb_000803_110 Hb_000803_110 Hb_001752_030--Hb_000803_110 Hb_000465_470 Hb_000465_470 Hb_001752_030--Hb_000465_470 Hb_000832_090 Hb_000832_090 Hb_001752_030--Hb_000832_090 Hb_002351_020 Hb_002351_020 Hb_001752_030--Hb_002351_020 Hb_007108_030 Hb_007108_030 Hb_001752_030--Hb_007108_030 Hb_000032_490 Hb_000032_490 Hb_001752_030--Hb_000032_490 Hb_008864_110 Hb_008864_110 Hb_000592_080--Hb_008864_110 Hb_002400_470 Hb_002400_470 Hb_000592_080--Hb_002400_470 Hb_001348_050 Hb_001348_050 Hb_000592_080--Hb_001348_050 Hb_001047_030 Hb_001047_030 Hb_000592_080--Hb_001047_030 Hb_000976_320 Hb_000976_320 Hb_000592_080--Hb_000976_320 Hb_000710_020 Hb_000710_020 Hb_000592_080--Hb_000710_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.88969 1.24247 2.05441 1.47723 3.99667 4.78726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.517312 2.10101 2.28547 1.98957 1.19939

CAGE analysis