Hb_034569_020

Information

Type -
Description -
Location Contig34569: 5510-14116
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034569_020 0.0 - - -
2 Hb_000922_310 0.1176588067 transcription factor TF Family: MYB PREDICTED: transcription factor MYB98-like [Jatropha curcas]
3 Hb_009742_010 0.1589335041 - - -
4 Hb_004899_280 0.1663607973 - - -
5 Hb_131949_010 0.1931429447 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
6 Hb_010979_010 0.2104552941 - - -
7 Hb_184798_040 0.2114299606 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
8 Hb_003362_060 0.2156702025 - - -
9 Hb_084426_010 0.2816720024 - - -
10 Hb_007963_050 0.2817869378 - - -
11 Hb_009693_040 0.2818613582 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Brassica rapa]
12 Hb_003607_030 0.282278789 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
13 Hb_000953_150 0.2886762268 - - -
14 Hb_007805_020 0.2899499188 - - -
15 Hb_000098_280 0.2901238547 - - PREDICTED: pentatricopeptide repeat-containing protein At1g33350 [Jatropha curcas]
16 Hb_171108_010 0.2914590555 - - -
17 Hb_080765_020 0.2936528809 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_046727_010 0.2945238775 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_007008_020 0.3007734017 - - -
20 Hb_000926_220 0.3020378868 - - -

Gene co-expression network

sample Hb_034569_020 Hb_034569_020 Hb_000922_310 Hb_000922_310 Hb_034569_020--Hb_000922_310 Hb_009742_010 Hb_009742_010 Hb_034569_020--Hb_009742_010 Hb_004899_280 Hb_004899_280 Hb_034569_020--Hb_004899_280 Hb_131949_010 Hb_131949_010 Hb_034569_020--Hb_131949_010 Hb_010979_010 Hb_010979_010 Hb_034569_020--Hb_010979_010 Hb_184798_040 Hb_184798_040 Hb_034569_020--Hb_184798_040 Hb_000922_310--Hb_004899_280 Hb_046727_010 Hb_046727_010 Hb_000922_310--Hb_046727_010 Hb_080765_020 Hb_080765_020 Hb_000922_310--Hb_080765_020 Hb_000098_280 Hb_000098_280 Hb_000922_310--Hb_000098_280 Hb_007008_020 Hb_007008_020 Hb_000922_310--Hb_007008_020 Hb_009742_010--Hb_000922_310 Hb_009742_010--Hb_004899_280 Hb_009742_010--Hb_131949_010 Hb_009742_010--Hb_184798_040 Hb_012500_010 Hb_012500_010 Hb_009742_010--Hb_012500_010 Hb_004899_280--Hb_131949_010 Hb_005975_020 Hb_005975_020 Hb_004899_280--Hb_005975_020 Hb_003362_060 Hb_003362_060 Hb_004899_280--Hb_003362_060 Hb_131949_010--Hb_003362_060 Hb_084426_010 Hb_084426_010 Hb_131949_010--Hb_084426_010 Hb_131949_010--Hb_184798_040 Hb_000171_040 Hb_000171_040 Hb_131949_010--Hb_000171_040 Hb_113823_010 Hb_113823_010 Hb_010979_010--Hb_113823_010 Hb_007805_020 Hb_007805_020 Hb_010979_010--Hb_007805_020 Hb_010979_010--Hb_184798_040 Hb_010979_010--Hb_009742_010 Hb_010979_010--Hb_004899_280 Hb_184798_040--Hb_003362_060 Hb_184798_040--Hb_000171_040 Hb_184798_040--Hb_004899_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.284524 0.0747321 0 0 0.138884 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis