Hb_034579_020

Information

Type -
Description -
Location Contig34579: 14330-15297
Sequence    

Annotation

kegg
ID rcu:RCOM_0437780
description hypothetical protein
nr
ID XP_002532548.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T2S9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0437780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034579_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000357_070 0.0643463268 - - -
3 Hb_012180_060 0.0907093785 - - peptidase, putative [Ricinus communis]
4 Hb_003050_360 0.1081239235 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
5 Hb_004545_080 0.1102895097 - - protein with unknown function [Ricinus communis]
6 Hb_002374_450 0.1122458849 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
7 Hb_003020_250 0.1157068641 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
8 Hb_000996_080 0.1171768708 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
9 Hb_112064_010 0.1189345124 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
10 Hb_000076_250 0.1192019472 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000388_080 0.120254365 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
12 Hb_000635_050 0.1206088068 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
13 Hb_001153_100 0.1208925862 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
14 Hb_007765_130 0.1230219598 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
15 Hb_000099_170 0.1233798328 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
16 Hb_003175_070 0.124316906 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
17 Hb_000689_050 0.1246141617 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000025_540 0.12470946 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
19 Hb_000227_400 0.1269647134 - - lipoxygenase, putative [Ricinus communis]
20 Hb_007904_060 0.1275920321 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_034579_020 Hb_034579_020 Hb_000357_070 Hb_000357_070 Hb_034579_020--Hb_000357_070 Hb_012180_060 Hb_012180_060 Hb_034579_020--Hb_012180_060 Hb_003050_360 Hb_003050_360 Hb_034579_020--Hb_003050_360 Hb_004545_080 Hb_004545_080 Hb_034579_020--Hb_004545_080 Hb_002374_450 Hb_002374_450 Hb_034579_020--Hb_002374_450 Hb_003020_250 Hb_003020_250 Hb_034579_020--Hb_003020_250 Hb_000388_080 Hb_000388_080 Hb_000357_070--Hb_000388_080 Hb_002028_110 Hb_002028_110 Hb_000357_070--Hb_002028_110 Hb_000635_050 Hb_000635_050 Hb_000357_070--Hb_000635_050 Hb_002675_080 Hb_002675_080 Hb_000357_070--Hb_002675_080 Hb_000283_140 Hb_000283_140 Hb_000357_070--Hb_000283_140 Hb_000689_050 Hb_000689_050 Hb_012180_060--Hb_000689_050 Hb_000076_250 Hb_000076_250 Hb_012180_060--Hb_000076_250 Hb_012180_060--Hb_004545_080 Hb_007904_060 Hb_007904_060 Hb_012180_060--Hb_007904_060 Hb_014497_010 Hb_014497_010 Hb_012180_060--Hb_014497_010 Hb_003050_360--Hb_000689_050 Hb_007101_260 Hb_007101_260 Hb_003050_360--Hb_007101_260 Hb_112064_010 Hb_112064_010 Hb_003050_360--Hb_112064_010 Hb_003050_360--Hb_004545_080 Hb_011174_040 Hb_011174_040 Hb_003050_360--Hb_011174_040 Hb_001377_530 Hb_001377_530 Hb_003050_360--Hb_001377_530 Hb_000032_410 Hb_000032_410 Hb_004545_080--Hb_000032_410 Hb_000527_080 Hb_000527_080 Hb_004545_080--Hb_000527_080 Hb_002942_140 Hb_002942_140 Hb_004545_080--Hb_002942_140 Hb_004545_080--Hb_000689_050 Hb_003175_070 Hb_003175_070 Hb_004545_080--Hb_003175_070 Hb_001348_090 Hb_001348_090 Hb_002374_450--Hb_001348_090 Hb_000414_080 Hb_000414_080 Hb_002374_450--Hb_000414_080 Hb_000441_050 Hb_000441_050 Hb_002374_450--Hb_000441_050 Hb_004242_170 Hb_004242_170 Hb_002374_450--Hb_004242_170 Hb_002044_160 Hb_002044_160 Hb_002374_450--Hb_002044_160 Hb_000951_120 Hb_000951_120 Hb_002374_450--Hb_000951_120 Hb_004440_070 Hb_004440_070 Hb_003020_250--Hb_004440_070 Hb_003752_090 Hb_003752_090 Hb_003020_250--Hb_003752_090 Hb_000996_080 Hb_000996_080 Hb_003020_250--Hb_000996_080 Hb_003020_250--Hb_007904_060 Hb_000327_200 Hb_000327_200 Hb_003020_250--Hb_000327_200 Hb_000940_030 Hb_000940_030 Hb_003020_250--Hb_000940_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92801 4.59627 15.2073 11.0243 0.518007 1.67435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.565109 1.68742 1.68866 3.47678 13.4058

CAGE analysis