Hb_034579_030

Information

Type -
Description -
Location Contig34579: 16965-18467
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034579_030 0.0 - - -
2 Hb_007403_090 0.1456803762 - - -
3 Hb_005656_050 0.1694839202 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
4 Hb_001357_080 0.1883789827 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
5 Hb_002539_090 0.1950544366 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
6 Hb_000313_010 0.2013447482 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_000672_120 0.2033749678 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
8 Hb_003964_100 0.2041302559 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
9 Hb_001173_040 0.2051987388 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
10 Hb_001789_130 0.208749238 - - short-chain dehydrogenase Tic32 family protein [Populus trichocarpa]
11 Hb_010436_060 0.2121139459 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
12 Hb_004448_020 0.2128896442 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
13 Hb_029866_070 0.2128952147 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
14 Hb_000751_130 0.2147052442 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
15 Hb_002878_010 0.2166237709 - - -
16 Hb_002482_040 0.2167527967 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
17 Hb_010812_010 0.217316159 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
18 Hb_001073_050 0.2178946897 - - -
19 Hb_001258_080 0.2184244586 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
20 Hb_000364_210 0.22012015 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_034579_030 Hb_034579_030 Hb_007403_090 Hb_007403_090 Hb_034579_030--Hb_007403_090 Hb_005656_050 Hb_005656_050 Hb_034579_030--Hb_005656_050 Hb_001357_080 Hb_001357_080 Hb_034579_030--Hb_001357_080 Hb_002539_090 Hb_002539_090 Hb_034579_030--Hb_002539_090 Hb_000313_010 Hb_000313_010 Hb_034579_030--Hb_000313_010 Hb_000672_120 Hb_000672_120 Hb_034579_030--Hb_000672_120 Hb_007403_090--Hb_005656_050 Hb_001173_040 Hb_001173_040 Hb_007403_090--Hb_001173_040 Hb_007403_090--Hb_002539_090 Hb_001008_010 Hb_001008_010 Hb_007403_090--Hb_001008_010 Hb_004448_020 Hb_004448_020 Hb_007403_090--Hb_004448_020 Hb_000380_010 Hb_000380_010 Hb_005656_050--Hb_000380_010 Hb_007012_020 Hb_007012_020 Hb_005656_050--Hb_007012_020 Hb_007317_060 Hb_007317_060 Hb_005656_050--Hb_007317_060 Hb_022092_090 Hb_022092_090 Hb_005656_050--Hb_022092_090 Hb_005117_010 Hb_005117_010 Hb_005656_050--Hb_005117_010 Hb_000963_190 Hb_000963_190 Hb_005656_050--Hb_000963_190 Hb_001357_080--Hb_002539_090 Hb_000046_110 Hb_000046_110 Hb_001357_080--Hb_000046_110 Hb_010436_060 Hb_010436_060 Hb_001357_080--Hb_010436_060 Hb_000751_130 Hb_000751_130 Hb_001357_080--Hb_000751_130 Hb_006641_010 Hb_006641_010 Hb_001357_080--Hb_006641_010 Hb_029866_070 Hb_029866_070 Hb_001357_080--Hb_029866_070 Hb_001258_080 Hb_001258_080 Hb_002539_090--Hb_001258_080 Hb_002539_090--Hb_000751_130 Hb_002539_090--Hb_001173_040 Hb_007594_090 Hb_007594_090 Hb_002539_090--Hb_007594_090 Hb_000172_030 Hb_000172_030 Hb_002539_090--Hb_000172_030 Hb_001638_240 Hb_001638_240 Hb_000313_010--Hb_001638_240 Hb_000313_010--Hb_001357_080 Hb_000313_010--Hb_002539_090 Hb_001579_310 Hb_001579_310 Hb_000313_010--Hb_001579_310 Hb_000313_010--Hb_000672_120 Hb_000313_010--Hb_007594_090 Hb_004336_050 Hb_004336_050 Hb_000672_120--Hb_004336_050 Hb_000672_120--Hb_007594_090 Hb_172706_030 Hb_172706_030 Hb_000672_120--Hb_172706_030 Hb_005588_070 Hb_005588_070 Hb_000672_120--Hb_005588_070 Hb_000224_120 Hb_000224_120 Hb_000672_120--Hb_000224_120 Hb_001307_090 Hb_001307_090 Hb_000672_120--Hb_001307_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.96688 0 0.969571 3.70331 4.75225 18.372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7709 21.3741 16.6198 0.844116 9.0248

CAGE analysis