Hb_034585_030

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig34585: 34420-35115
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11790g
description POPTRDRAFT_563045; DNA binding with one finger 5 family protein
nr
ID NP_001295739.1
description dof zinc finger protein DOF3.4 [Jatropha curcas]
swissprot
ID Q9FGD6
description Dof zinc finger protein DOF5.8 OS=Arabidopsis thaliana GN=DOF5.8 PE=2 SV=1
trembl
ID A0A0A7CB76
description DNA binding with one finger 2 OS=Jatropha curcas GN=Dof2 PE=2 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36090: 34248-35316
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034585_030 0.0 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
2 Hb_000510_090 0.0809104026 - - 40S ribosomal protein S15 [Morus notabilis]
3 Hb_007166_050 0.0865914249 - - -
4 Hb_134226_010 0.08847065 - - 40S ribosomal protein S21e, putative [Ricinus communis]
5 Hb_003086_110 0.0923690283 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
6 Hb_000442_160 0.0964578791 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
7 Hb_133271_020 0.103752282 - - prohibitin, putative [Ricinus communis]
8 Hb_000189_530 0.1056597577 - - 40S ribosomal protein S24B [Hevea brasiliensis]
9 Hb_004724_100 0.105965078 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
10 Hb_000617_320 0.1066345685 - - 40S ribosomal protein S21B [Hevea brasiliensis]
11 Hb_000442_100 0.1070175258 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
12 Hb_000752_060 0.1074847095 - - expressed protein, putative [Ricinus communis]
13 Hb_118977_020 0.1082265574 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
14 Hb_001047_010 0.1085659989 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000622_100 0.110955823 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
16 Hb_007632_250 0.1110670438 - - conserved hypothetical protein [Ricinus communis]
17 Hb_123475_010 0.1130573066 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
18 Hb_005735_030 0.1139808281 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000175_070 0.1150817118 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
20 Hb_004453_150 0.11545821 - - BnaC02g13240D [Brassica napus]

Gene co-expression network

sample Hb_034585_030 Hb_034585_030 Hb_000510_090 Hb_000510_090 Hb_034585_030--Hb_000510_090 Hb_007166_050 Hb_007166_050 Hb_034585_030--Hb_007166_050 Hb_134226_010 Hb_134226_010 Hb_034585_030--Hb_134226_010 Hb_003086_110 Hb_003086_110 Hb_034585_030--Hb_003086_110 Hb_000442_160 Hb_000442_160 Hb_034585_030--Hb_000442_160 Hb_133271_020 Hb_133271_020 Hb_034585_030--Hb_133271_020 Hb_143813_010 Hb_143813_010 Hb_000510_090--Hb_143813_010 Hb_004724_100 Hb_004724_100 Hb_000510_090--Hb_004724_100 Hb_155375_010 Hb_155375_010 Hb_000510_090--Hb_155375_010 Hb_003777_270 Hb_003777_270 Hb_000510_090--Hb_003777_270 Hb_141131_010 Hb_141131_010 Hb_000510_090--Hb_141131_010 Hb_007166_050--Hb_003086_110 Hb_000617_320 Hb_000617_320 Hb_007166_050--Hb_000617_320 Hb_001019_090 Hb_001019_090 Hb_007166_050--Hb_001019_090 Hb_118977_020 Hb_118977_020 Hb_007166_050--Hb_118977_020 Hb_001437_040 Hb_001437_040 Hb_007166_050--Hb_001437_040 Hb_000316_110 Hb_000316_110 Hb_007166_050--Hb_000316_110 Hb_000847_070 Hb_000847_070 Hb_134226_010--Hb_000847_070 Hb_134226_010--Hb_133271_020 Hb_134226_010--Hb_118977_020 Hb_003688_100 Hb_003688_100 Hb_134226_010--Hb_003688_100 Hb_001514_020 Hb_001514_020 Hb_134226_010--Hb_001514_020 Hb_001221_230 Hb_001221_230 Hb_134226_010--Hb_001221_230 Hb_003086_020 Hb_003086_020 Hb_003086_110--Hb_003086_020 Hb_003086_110--Hb_118977_020 Hb_000272_100 Hb_000272_100 Hb_003086_110--Hb_000272_100 Hb_003086_110--Hb_001437_040 Hb_003086_110--Hb_000617_320 Hb_006447_010 Hb_006447_010 Hb_000442_160--Hb_006447_010 Hb_000365_360 Hb_000365_360 Hb_000442_160--Hb_000365_360 Hb_000749_150 Hb_000749_150 Hb_000442_160--Hb_000749_150 Hb_000442_160--Hb_133271_020 Hb_001246_100 Hb_001246_100 Hb_000442_160--Hb_001246_100 Hb_010608_010 Hb_010608_010 Hb_000442_160--Hb_010608_010 Hb_158092_070 Hb_158092_070 Hb_133271_020--Hb_158092_070 Hb_004662_030 Hb_004662_030 Hb_133271_020--Hb_004662_030 Hb_000975_290 Hb_000975_290 Hb_133271_020--Hb_000975_290 Hb_001030_120 Hb_001030_120 Hb_133271_020--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_133271_020--Hb_002686_270 Hb_004223_130 Hb_004223_130 Hb_133271_020--Hb_004223_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
101.788 17.9866 9.09458 29.1282 73.32 151.155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.3361 88.795 48.8158 39.7643 2.15405

CAGE analysis