Hb_034585_040

Information

Type -
Description -
Location Contig34585: 52786-61946
Sequence    

Annotation

kegg
ID sot:102598416
description mediator of RNA polymerase II transcription subunit 15-like
nr
ID XP_012079149.1
description PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
swissprot
ID Q8RWH9
description Nuclear pore complex protein NUP58 OS=Arabidopsis thaliana GN=NUP58 PE=1 SV=1
trembl
ID A0A067K6J9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12322 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex protein nup58

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36091: 52999-56201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034585_040 0.0 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
2 Hb_000563_590 0.0948409621 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
3 Hb_001621_180 0.1011309907 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
4 Hb_002781_020 0.1019906456 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
5 Hb_001123_120 0.1057823384 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
6 Hb_009252_130 0.1103050799 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
7 Hb_007021_020 0.1116448223 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
8 Hb_001252_140 0.1175668768 - - catalytic, putative [Ricinus communis]
9 Hb_000634_050 0.1179896964 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
10 Hb_001454_330 0.1190087606 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
11 Hb_000599_090 0.1191404224 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
12 Hb_002007_050 0.1196015151 - - PREDICTED: putative protease Do-like 14 [Jatropha curcas]
13 Hb_011689_050 0.1196180822 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
14 Hb_183963_020 0.119627886 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
15 Hb_009404_020 0.1196902863 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000567_170 0.1221661125 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
17 Hb_007441_180 0.1222911814 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011465_040 0.1229727122 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
19 Hb_002660_160 0.1232483941 - - protein binding protein, putative [Ricinus communis]
20 Hb_000028_400 0.1232639922 - - Protein SSU72, putative [Ricinus communis]

Gene co-expression network

sample Hb_034585_040 Hb_034585_040 Hb_000563_590 Hb_000563_590 Hb_034585_040--Hb_000563_590 Hb_001621_180 Hb_001621_180 Hb_034585_040--Hb_001621_180 Hb_002781_020 Hb_002781_020 Hb_034585_040--Hb_002781_020 Hb_001123_120 Hb_001123_120 Hb_034585_040--Hb_001123_120 Hb_009252_130 Hb_009252_130 Hb_034585_040--Hb_009252_130 Hb_007021_020 Hb_007021_020 Hb_034585_040--Hb_007021_020 Hb_001454_330 Hb_001454_330 Hb_000563_590--Hb_001454_330 Hb_001104_120 Hb_001104_120 Hb_000563_590--Hb_001104_120 Hb_000089_130 Hb_000089_130 Hb_000563_590--Hb_000089_130 Hb_011139_020 Hb_011139_020 Hb_000563_590--Hb_011139_020 Hb_000563_590--Hb_001621_180 Hb_183963_020 Hb_183963_020 Hb_000563_590--Hb_183963_020 Hb_001252_140 Hb_001252_140 Hb_001621_180--Hb_001252_140 Hb_007441_180 Hb_007441_180 Hb_001621_180--Hb_007441_180 Hb_001621_180--Hb_009252_130 Hb_005615_070 Hb_005615_070 Hb_001621_180--Hb_005615_070 Hb_001621_180--Hb_001104_120 Hb_000634_050 Hb_000634_050 Hb_002781_020--Hb_000634_050 Hb_008847_020 Hb_008847_020 Hb_002781_020--Hb_008847_020 Hb_010172_030 Hb_010172_030 Hb_002781_020--Hb_010172_030 Hb_000161_050 Hb_000161_050 Hb_002781_020--Hb_000161_050 Hb_000362_210 Hb_000362_210 Hb_002781_020--Hb_000362_210 Hb_000045_190 Hb_000045_190 Hb_002781_020--Hb_000045_190 Hb_000085_330 Hb_000085_330 Hb_001123_120--Hb_000085_330 Hb_017862_010 Hb_017862_010 Hb_001123_120--Hb_017862_010 Hb_148930_010 Hb_148930_010 Hb_001123_120--Hb_148930_010 Hb_001123_120--Hb_010172_030 Hb_000236_460 Hb_000236_460 Hb_001123_120--Hb_000236_460 Hb_001123_120--Hb_002781_020 Hb_000190_060 Hb_000190_060 Hb_009252_130--Hb_000190_060 Hb_000815_270 Hb_000815_270 Hb_009252_130--Hb_000815_270 Hb_001616_020 Hb_001616_020 Hb_009252_130--Hb_001616_020 Hb_009252_130--Hb_000563_590 Hb_000061_480 Hb_000061_480 Hb_009252_130--Hb_000061_480 Hb_007021_020--Hb_000362_210 Hb_002660_160 Hb_002660_160 Hb_007021_020--Hb_002660_160 Hb_000051_040 Hb_000051_040 Hb_007021_020--Hb_000051_040 Hb_007021_020--Hb_183963_020 Hb_000212_260 Hb_000212_260 Hb_007021_020--Hb_000212_260 Hb_001427_120 Hb_001427_120 Hb_007021_020--Hb_001427_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.4578 5.99386 1.68154 2.67199 24.1447 33.6434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.4264 85.9728 35.2417 9.81589 5.36922

CAGE analysis