Hb_034585_050

Information

Type -
Description -
Location Contig34585: 55828-56341
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034585_050 0.0 - - -
2 Hb_002918_140 0.0849854945 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
3 Hb_006738_010 0.1000885301 - - PREDICTED: uncharacterized protein LOC105634993 [Jatropha curcas]
4 Hb_010594_030 0.1029704893 - - -
5 Hb_003043_120 0.1098665384 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011245_020 0.1102742241 - - Ferrochelatase [Medicago truncatula]
7 Hb_017862_010 0.1149428009 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
8 Hb_001102_250 0.1188597809 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
9 Hb_003349_070 0.120895588 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
10 Hb_001123_120 0.1215477273 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
11 Hb_001369_400 0.1247964821 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
12 Hb_034585_040 0.1294827097 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
13 Hb_001159_200 0.1299762271 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
14 Hb_001017_070 0.1310115917 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005505_020 0.1324572537 - - Potassium channel AKT1, putative [Ricinus communis]
16 Hb_000224_090 0.1341672395 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
17 Hb_000085_330 0.1351280619 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
18 Hb_011689_050 0.1361572853 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
19 Hb_000684_160 0.1382697 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
20 Hb_183086_040 0.1391060853 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]

Gene co-expression network

sample Hb_034585_050 Hb_034585_050 Hb_002918_140 Hb_002918_140 Hb_034585_050--Hb_002918_140 Hb_006738_010 Hb_006738_010 Hb_034585_050--Hb_006738_010 Hb_010594_030 Hb_010594_030 Hb_034585_050--Hb_010594_030 Hb_003043_120 Hb_003043_120 Hb_034585_050--Hb_003043_120 Hb_011245_020 Hb_011245_020 Hb_034585_050--Hb_011245_020 Hb_017862_010 Hb_017862_010 Hb_034585_050--Hb_017862_010 Hb_001863_420 Hb_001863_420 Hb_002918_140--Hb_001863_420 Hb_001386_050 Hb_001386_050 Hb_002918_140--Hb_001386_050 Hb_001017_070 Hb_001017_070 Hb_002918_140--Hb_001017_070 Hb_002918_140--Hb_017862_010 Hb_000676_240 Hb_000676_240 Hb_002918_140--Hb_000676_240 Hb_005505_020 Hb_005505_020 Hb_006738_010--Hb_005505_020 Hb_001785_040 Hb_001785_040 Hb_006738_010--Hb_001785_040 Hb_006738_010--Hb_002918_140 Hb_001159_200 Hb_001159_200 Hb_006738_010--Hb_001159_200 Hb_183086_040 Hb_183086_040 Hb_006738_010--Hb_183086_040 Hb_001102_250 Hb_001102_250 Hb_010594_030--Hb_001102_250 Hb_002492_020 Hb_002492_020 Hb_010594_030--Hb_002492_020 Hb_005211_070 Hb_005211_070 Hb_010594_030--Hb_005211_070 Hb_012395_210 Hb_012395_210 Hb_010594_030--Hb_012395_210 Hb_006351_110 Hb_006351_110 Hb_010594_030--Hb_006351_110 Hb_003043_120--Hb_011245_020 Hb_003043_120--Hb_017862_010 Hb_003043_120--Hb_001102_250 Hb_006831_030 Hb_006831_030 Hb_003043_120--Hb_006831_030 Hb_000069_100 Hb_000069_100 Hb_003043_120--Hb_000069_100 Hb_011245_020--Hb_006831_030 Hb_000367_280 Hb_000367_280 Hb_011245_020--Hb_000367_280 Hb_001268_080 Hb_001268_080 Hb_011245_020--Hb_001268_080 Hb_007810_030 Hb_007810_030 Hb_011245_020--Hb_007810_030 Hb_011245_020--Hb_017862_010 Hb_002603_150 Hb_002603_150 Hb_017862_010--Hb_002603_150 Hb_017862_010--Hb_000069_100 Hb_001123_120 Hb_001123_120 Hb_017862_010--Hb_001123_120 Hb_000212_260 Hb_000212_260 Hb_017862_010--Hb_000212_260 Hb_017862_010--Hb_006831_030 Hb_000224_090 Hb_000224_090 Hb_017862_010--Hb_000224_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.471 5.78435 1.93262 2.57929 14.2354 21.7534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.7411 114.344 57.0408 12.5332 8.87435

CAGE analysis