Hb_034642_010

Information

Type -
Description -
Location Contig34642: 3982-4731
Sequence    

Annotation

kegg
ID pop:POPTR_0002s12010g
description POPTRDRAFT_411238; hypothetical protein
nr
ID XP_012068237.1
description PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
swissprot
ID O22533
description Zinc finger protein ZAT6 OS=Arabidopsis thaliana GN=ZAT6 PE=2 SV=1
trembl
ID A0A067LC07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16041 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein zat10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36141: 3817-4921
cDNA
(Sanger)
(ID:Location)		 023_P20.ab1: 4638-4851

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034642_010 0.0 - - PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]
2 Hb_027506_060 0.0801943718 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
3 Hb_000032_150 0.0907743518 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
4 Hb_001257_040 0.0920114719 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
5 Hb_078171_010 0.0955156896 - - PREDICTED: uncharacterized RING finger protein P8B7.15c-like [Jatropha curcas]
6 Hb_047955_010 0.1097548515 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
7 Hb_004586_120 0.1110139556 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
8 Hb_002542_030 0.11569006 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
9 Hb_124953_010 0.1178485561 - - hypothetical protein RCOM_1314600 [Ricinus communis]
10 Hb_000422_050 0.1225062227 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
11 Hb_004032_220 0.1238363899 - - Calmodulin, putative [Ricinus communis]
12 Hb_007858_020 0.1243349543 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
13 Hb_125201_010 0.1250874286 - - hypothetical protein POPTR_0004s03690g [Populus trichocarpa]
14 Hb_005618_020 0.1291339561 - - hypothetical protein RCOM_1342750 [Ricinus communis]
15 Hb_005054_330 0.1295659074 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
16 Hb_000571_030 0.1314838814 - - ammonium transporter, putative [Ricinus communis]
17 Hb_002252_030 0.1322977313 - - hypothetical protein JCGZ_06771 [Jatropha curcas]
18 Hb_005248_020 0.1342100001 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
19 Hb_003207_230 0.1342734115 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
20 Hb_157957_010 0.1354506437 - - hypothetical protein JCGZ_10722 [Jatropha curcas]

Gene co-expression network

sample Hb_034642_010 Hb_034642_010 Hb_027506_060 Hb_027506_060 Hb_034642_010--Hb_027506_060 Hb_000032_150 Hb_000032_150 Hb_034642_010--Hb_000032_150 Hb_001257_040 Hb_001257_040 Hb_034642_010--Hb_001257_040 Hb_078171_010 Hb_078171_010 Hb_034642_010--Hb_078171_010 Hb_047955_010 Hb_047955_010 Hb_034642_010--Hb_047955_010 Hb_004586_120 Hb_004586_120 Hb_034642_010--Hb_004586_120 Hb_125201_010 Hb_125201_010 Hb_027506_060--Hb_125201_010 Hb_027506_060--Hb_047955_010 Hb_027506_060--Hb_000032_150 Hb_027506_060--Hb_001257_040 Hb_000086_600 Hb_000086_600 Hb_027506_060--Hb_000086_600 Hb_000032_150--Hb_047955_010 Hb_124953_010 Hb_124953_010 Hb_000032_150--Hb_124953_010 Hb_000032_150--Hb_001257_040 Hb_003207_230 Hb_003207_230 Hb_000032_150--Hb_003207_230 Hb_007858_020 Hb_007858_020 Hb_000032_150--Hb_007858_020 Hb_004032_220 Hb_004032_220 Hb_000032_150--Hb_004032_220 Hb_001257_040--Hb_004586_120 Hb_000422_050 Hb_000422_050 Hb_001257_040--Hb_000422_050 Hb_000322_020 Hb_000322_020 Hb_001257_040--Hb_000322_020 Hb_001257_040--Hb_124953_010 Hb_001257_040--Hb_004032_220 Hb_078171_010--Hb_027506_060 Hb_034581_010 Hb_034581_010 Hb_078171_010--Hb_034581_010 Hb_157957_010 Hb_157957_010 Hb_078171_010--Hb_157957_010 Hb_110356_010 Hb_110356_010 Hb_078171_010--Hb_110356_010 Hb_000359_230 Hb_000359_230 Hb_078171_010--Hb_000359_230 Hb_047955_010--Hb_003207_230 Hb_047955_010--Hb_000359_230 Hb_047955_010--Hb_124953_010 Hb_002252_030 Hb_002252_030 Hb_047955_010--Hb_002252_030 Hb_047955_010--Hb_157957_010 Hb_004586_120--Hb_000322_020 Hb_004586_120--Hb_125201_010 Hb_004586_120--Hb_000422_050 Hb_005618_020 Hb_005618_020 Hb_004586_120--Hb_005618_020 Hb_001477_080 Hb_001477_080 Hb_004586_120--Hb_001477_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02049 1459.88 525.611 260.913 0.241602 0.635943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.67628 43.2425 0.547851 5.15991 18.4913

CAGE analysis