Hb_034667_020

Information

Type -
Description -
Location Contig34667: 2241-2447
Sequence    

Annotation

kegg
ID rcu:RCOM_0174760
description hypothetical protein
nr
ID XP_002527491.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNC2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034667_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_171619_010 0.2142751799 - - protein binding protein, putative [Ricinus communis]
3 Hb_001277_410 0.2342791675 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
4 Hb_001023_020 0.2425705238 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
5 Hb_040779_010 0.2447181531 - - -
6 Hb_036693_010 0.2452813488 - - -
7 Hb_000160_150 0.2454611899 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
8 Hb_000193_150 0.2517233404 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
9 Hb_005517_010 0.2560761874 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
10 Hb_005883_040 0.257707427 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
11 Hb_000256_210 0.2586012916 - - PREDICTED: 40S ribosomal protein S11-like [Phoenix dactylifera]
12 Hb_006230_040 0.2626833507 - - kinase, putative [Ricinus communis]
13 Hb_170532_010 0.2675971598 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
14 Hb_124961_010 0.2680356874 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
15 Hb_101020_010 0.2688289215 - - -
16 Hb_018118_020 0.2737874448 - - unnamed protein product [Vitis vinifera]
17 Hb_000997_410 0.2788471401 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
18 Hb_000571_010 0.2797754009 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Gossypium raimondii]
19 Hb_006960_030 0.2803554417 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44-like [Jatropha curcas]
20 Hb_002783_010 0.2806828339 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]

Gene co-expression network

sample Hb_034667_020 Hb_034667_020 Hb_171619_010 Hb_171619_010 Hb_034667_020--Hb_171619_010 Hb_001277_410 Hb_001277_410 Hb_034667_020--Hb_001277_410 Hb_001023_020 Hb_001023_020 Hb_034667_020--Hb_001023_020 Hb_040779_010 Hb_040779_010 Hb_034667_020--Hb_040779_010 Hb_036693_010 Hb_036693_010 Hb_034667_020--Hb_036693_010 Hb_000160_150 Hb_000160_150 Hb_034667_020--Hb_000160_150 Hb_124961_010 Hb_124961_010 Hb_171619_010--Hb_124961_010 Hb_170532_010 Hb_170532_010 Hb_171619_010--Hb_170532_010 Hb_171619_010--Hb_000160_150 Hb_003297_020 Hb_003297_020 Hb_171619_010--Hb_003297_020 Hb_101020_010 Hb_101020_010 Hb_171619_010--Hb_101020_010 Hb_006230_040 Hb_006230_040 Hb_171619_010--Hb_006230_040 Hb_001916_120 Hb_001916_120 Hb_001277_410--Hb_001916_120 Hb_001138_010 Hb_001138_010 Hb_001277_410--Hb_001138_010 Hb_000252_090 Hb_000252_090 Hb_001277_410--Hb_000252_090 Hb_000258_020 Hb_000258_020 Hb_001277_410--Hb_000258_020 Hb_001277_410--Hb_101020_010 Hb_020549_010 Hb_020549_010 Hb_001277_410--Hb_020549_010 Hb_057746_010 Hb_057746_010 Hb_001023_020--Hb_057746_010 Hb_000002_320 Hb_000002_320 Hb_001023_020--Hb_000002_320 Hb_007827_020 Hb_007827_020 Hb_001023_020--Hb_007827_020 Hb_114261_010 Hb_114261_010 Hb_001023_020--Hb_114261_010 Hb_000270_500 Hb_000270_500 Hb_001023_020--Hb_000270_500 Hb_184629_010 Hb_184629_010 Hb_040779_010--Hb_184629_010 Hb_000214_090 Hb_000214_090 Hb_040779_010--Hb_000214_090 Hb_000200_060 Hb_000200_060 Hb_040779_010--Hb_000200_060 Hb_028848_030 Hb_028848_030 Hb_040779_010--Hb_028848_030 Hb_000922_440 Hb_000922_440 Hb_040779_010--Hb_000922_440 Hb_012107_070 Hb_012107_070 Hb_040779_010--Hb_012107_070 Hb_005155_020 Hb_005155_020 Hb_036693_010--Hb_005155_020 Hb_005517_010 Hb_005517_010 Hb_036693_010--Hb_005517_010 Hb_000169_190 Hb_000169_190 Hb_036693_010--Hb_000169_190 Hb_036693_010--Hb_012107_070 Hb_000099_090 Hb_000099_090 Hb_036693_010--Hb_000099_090 Hb_012184_050 Hb_012184_050 Hb_036693_010--Hb_012184_050 Hb_002708_020 Hb_002708_020 Hb_000160_150--Hb_002708_020 Hb_027402_090 Hb_027402_090 Hb_000160_150--Hb_027402_090 Hb_008246_030 Hb_008246_030 Hb_000160_150--Hb_008246_030 Hb_000160_150--Hb_170532_010 Hb_002686_330 Hb_002686_330 Hb_000160_150--Hb_002686_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
132.651 35.7963 64.7877 9.96346 38.423 155.283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.12179 10.8587 9.30781

CAGE analysis