Hb_034722_010

Information

Type -
Description -
Location Contig34722: 16864-19431
Sequence    

Annotation

kegg
ID mdm:103454290
description putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial
nr
ID XP_011033281.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Populus euphratica]
swissprot
ID Q9LIC3
description Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3 SV=1
trembl
ID B9II40
description Pentatricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0016s05180g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034722_010 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [Populus euphratica]
2 Hb_000803_150 0.1048690736 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
3 Hb_004048_090 0.1084845313 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Jatropha curcas]
4 Hb_001274_030 0.1143822456 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
5 Hb_000162_090 0.1235480187 - - PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]
6 Hb_020902_010 0.1269134503 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
7 Hb_000173_400 0.1269957243 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
8 Hb_002863_040 0.1292430681 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
9 Hb_006816_320 0.1293793865 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
10 Hb_004447_060 0.1295384647 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
11 Hb_041091_010 0.1297877932 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
12 Hb_000878_130 0.1309765812 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005307_030 0.1343424304 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
14 Hb_001538_010 0.1358248873 - - -
15 Hb_000787_110 0.1381986888 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]
16 Hb_011161_010 0.1384430523 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 isoform X1 [Jatropha curcas]
17 Hb_001232_160 0.1386823079 - - PREDICTED: protein SYS1 homolog [Gossypium raimondii]
18 Hb_000749_150 0.1387768809 - - -
19 Hb_002810_020 0.1403373156 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
20 Hb_001771_130 0.1407621511 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]

Gene co-expression network

sample Hb_034722_010 Hb_034722_010 Hb_000803_150 Hb_000803_150 Hb_034722_010--Hb_000803_150 Hb_004048_090 Hb_004048_090 Hb_034722_010--Hb_004048_090 Hb_001274_030 Hb_001274_030 Hb_034722_010--Hb_001274_030 Hb_000162_090 Hb_000162_090 Hb_034722_010--Hb_000162_090 Hb_020902_010 Hb_020902_010 Hb_034722_010--Hb_020902_010 Hb_000173_400 Hb_000173_400 Hb_034722_010--Hb_000173_400 Hb_001214_130 Hb_001214_130 Hb_000803_150--Hb_001214_130 Hb_000803_150--Hb_000162_090 Hb_000749_150 Hb_000749_150 Hb_000803_150--Hb_000749_150 Hb_041091_010 Hb_041091_010 Hb_000803_150--Hb_041091_010 Hb_003642_060 Hb_003642_060 Hb_000803_150--Hb_003642_060 Hb_185467_020 Hb_185467_020 Hb_000803_150--Hb_185467_020 Hb_004048_090--Hb_041091_010 Hb_004048_090--Hb_000803_150 Hb_002863_040 Hb_002863_040 Hb_004048_090--Hb_002863_040 Hb_000195_020 Hb_000195_020 Hb_004048_090--Hb_000195_020 Hb_003938_080 Hb_003938_080 Hb_004048_090--Hb_003938_080 Hb_000538_200 Hb_000538_200 Hb_004048_090--Hb_000538_200 Hb_001913_010 Hb_001913_010 Hb_001274_030--Hb_001913_010 Hb_001823_100 Hb_001823_100 Hb_001274_030--Hb_001823_100 Hb_001274_030--Hb_000162_090 Hb_001274_030--Hb_000803_150 Hb_007951_050 Hb_007951_050 Hb_001274_030--Hb_007951_050 Hb_000787_110 Hb_000787_110 Hb_001274_030--Hb_000787_110 Hb_001511_020 Hb_001511_020 Hb_000162_090--Hb_001511_020 Hb_000162_090--Hb_003642_060 Hb_000165_030 Hb_000165_030 Hb_000162_090--Hb_000165_030 Hb_000089_220 Hb_000089_220 Hb_000162_090--Hb_000089_220 Hb_000162_090--Hb_001913_010 Hb_036034_010 Hb_036034_010 Hb_020902_010--Hb_036034_010 Hb_000878_130 Hb_000878_130 Hb_020902_010--Hb_000878_130 Hb_000307_200 Hb_000307_200 Hb_020902_010--Hb_000307_200 Hb_012286_050 Hb_012286_050 Hb_020902_010--Hb_012286_050 Hb_014568_030 Hb_014568_030 Hb_020902_010--Hb_014568_030 Hb_004735_010 Hb_004735_010 Hb_020902_010--Hb_004735_010 Hb_000953_010 Hb_000953_010 Hb_000173_400--Hb_000953_010 Hb_004055_040 Hb_004055_040 Hb_000173_400--Hb_004055_040 Hb_004734_060 Hb_004734_060 Hb_000173_400--Hb_004734_060 Hb_002928_060 Hb_002928_060 Hb_000173_400--Hb_002928_060 Hb_000803_190 Hb_000803_190 Hb_000173_400--Hb_000803_190 Hb_001771_130 Hb_001771_130 Hb_000173_400--Hb_001771_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.53097 0.94059 0.289683 0.366805 1.02564 3.17131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.685799 1.20512 1.46621 0.300583 0.493995

CAGE analysis