Hb_034909_010

Information

Type -
Description -
Location Contig34909: 10563-15259
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034909_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_003410_020 0.0001167777 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_004566_050 0.0212488903 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_111985_030 0.0216643303 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
5 Hb_071998_010 0.0281818858 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
6 Hb_011888_010 0.0321516028 - - Receptor like protein 46, putative [Theobroma cacao]
7 Hb_001318_060 0.0382935037 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
8 Hb_010435_010 0.0469271047 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_144813_010 0.0648027749 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
10 Hb_003582_050 0.0779775555 - - hypothetical protein POPTR_0008s13950g [Populus trichocarpa]
11 Hb_002836_030 0.081756296 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
12 Hb_000417_330 0.0914528394 - - -
13 Hb_000320_170 0.0972884273 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008576_010 0.0976966738 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_149253_010 0.1019189824 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
16 Hb_003943_060 0.1027025675 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
17 Hb_012438_020 0.1040263438 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_001383_040 0.104432473 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
19 Hb_127835_030 0.1222759269 - - -
20 Hb_160879_010 0.1312274528 - - PREDICTED: uncharacterized protein LOC105629277 [Jatropha curcas]

Gene co-expression network

sample Hb_034909_010 Hb_034909_010 Hb_003410_020 Hb_003410_020 Hb_034909_010--Hb_003410_020 Hb_004566_050 Hb_004566_050 Hb_034909_010--Hb_004566_050 Hb_111985_030 Hb_111985_030 Hb_034909_010--Hb_111985_030 Hb_071998_010 Hb_071998_010 Hb_034909_010--Hb_071998_010 Hb_011888_010 Hb_011888_010 Hb_034909_010--Hb_011888_010 Hb_001318_060 Hb_001318_060 Hb_034909_010--Hb_001318_060 Hb_003410_020--Hb_004566_050 Hb_003410_020--Hb_111985_030 Hb_003410_020--Hb_071998_010 Hb_003410_020--Hb_011888_010 Hb_003410_020--Hb_001318_060 Hb_004566_050--Hb_111985_030 Hb_004566_050--Hb_001318_060 Hb_010435_010 Hb_010435_010 Hb_004566_050--Hb_010435_010 Hb_004566_050--Hb_071998_010 Hb_111985_030--Hb_001318_060 Hb_111985_030--Hb_010435_010 Hb_111985_030--Hb_071998_010 Hb_071998_010--Hb_011888_010 Hb_144813_010 Hb_144813_010 Hb_071998_010--Hb_144813_010 Hb_003582_050 Hb_003582_050 Hb_071998_010--Hb_003582_050 Hb_011888_010--Hb_144813_010 Hb_011888_010--Hb_003582_050 Hb_002836_030 Hb_002836_030 Hb_011888_010--Hb_002836_030 Hb_001318_060--Hb_010435_010 Hb_000417_330 Hb_000417_330 Hb_001318_060--Hb_000417_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0154726 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0179814

CAGE analysis