Hb_035006_010

Information

Type -
Description -
Location Contig35006: 1-282
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11350g
description POPTRDRAFT_577573; hypothetical protein
nr
ID XP_002324034.1
description hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IJS6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s11350g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36473: 107-424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035006_010 0.0 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
2 Hb_021443_020 0.0766045753 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
3 Hb_007313_050 0.1020252829 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
4 Hb_003939_090 0.1130204117 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_000286_210 0.1165236316 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
6 Hb_005900_020 0.1166897196 - - -
7 Hb_001059_050 0.1178649852 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
8 Hb_001213_080 0.1219009463 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]
9 Hb_006890_050 0.1329529691 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
10 Hb_002639_120 0.1351509928 - - unnamed protein product [Vitis vinifera]
11 Hb_001227_010 0.1354333305 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
12 Hb_001610_050 0.1367316399 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
13 Hb_007075_020 0.1369307288 transcription factor TF Family: TRAF ankyrin repeat family protein [Populus trichocarpa]
14 Hb_151616_010 0.1379556545 - - -
15 Hb_000002_230 0.1438155522 - - RING/U-box superfamily protein [Theobroma cacao]
16 Hb_148914_020 0.1447646753 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
17 Hb_000702_040 0.1491251039 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
18 Hb_132517_010 0.1503106678 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
19 Hb_005389_090 0.1505889174 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
20 Hb_006550_010 0.151103185 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_035006_010 Hb_035006_010 Hb_021443_020 Hb_021443_020 Hb_035006_010--Hb_021443_020 Hb_007313_050 Hb_007313_050 Hb_035006_010--Hb_007313_050 Hb_003939_090 Hb_003939_090 Hb_035006_010--Hb_003939_090 Hb_000286_210 Hb_000286_210 Hb_035006_010--Hb_000286_210 Hb_005900_020 Hb_005900_020 Hb_035006_010--Hb_005900_020 Hb_001059_050 Hb_001059_050 Hb_035006_010--Hb_001059_050 Hb_021443_020--Hb_007313_050 Hb_021443_020--Hb_001059_050 Hb_021443_020--Hb_000286_210 Hb_001610_050 Hb_001610_050 Hb_021443_020--Hb_001610_050 Hb_001227_010 Hb_001227_010 Hb_021443_020--Hb_001227_010 Hb_001213_080 Hb_001213_080 Hb_007313_050--Hb_001213_080 Hb_007313_050--Hb_003939_090 Hb_007313_050--Hb_001059_050 Hb_007313_050--Hb_000286_210 Hb_015884_010 Hb_015884_010 Hb_003939_090--Hb_015884_010 Hb_010642_010 Hb_010642_010 Hb_003939_090--Hb_010642_010 Hb_000702_040 Hb_000702_040 Hb_003939_090--Hb_000702_040 Hb_003939_090--Hb_021443_020 Hb_151616_010 Hb_151616_010 Hb_000286_210--Hb_151616_010 Hb_000286_210--Hb_001059_050 Hb_003012_010 Hb_003012_010 Hb_000286_210--Hb_003012_010 Hb_000286_210--Hb_001213_080 Hb_002639_120 Hb_002639_120 Hb_000286_210--Hb_002639_120 Hb_066350_010 Hb_066350_010 Hb_005900_020--Hb_066350_010 Hb_148914_020 Hb_148914_020 Hb_005900_020--Hb_148914_020 Hb_179118_010 Hb_179118_010 Hb_005900_020--Hb_179118_010 Hb_004590_010 Hb_004590_010 Hb_005900_020--Hb_004590_010 Hb_005900_020--Hb_021443_020 Hb_001059_050--Hb_151616_010 Hb_132517_010 Hb_132517_010 Hb_001059_050--Hb_132517_010 Hb_001059_050--Hb_001213_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30849 96.1239 13.4783 133.042 0.534385 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.76006 0.347207 0 24.1177 1.0321

CAGE analysis