Hb_035391_010

Information

Type -
Description -
Location Contig35391: 2429-3898
Sequence    

Annotation

kegg
ID rcu:RCOM_1045150
description TMV resistance protein N, putative
nr
ID XP_002523474.1
description TMV resistance protein N, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SBV5
description TMV resistance protein N, putative OS=Ricinus communis GN=RCOM_1045150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36688: 2979-3202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035391_010 0.0 - - TMV resistance protein N, putative [Ricinus communis]
2 Hb_003582_020 0.0976951962 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Eucalyptus grandis]
3 Hb_000210_150 0.1019201306 - - PREDICTED: protein YLS9-like [Jatropha curcas]
4 Hb_025477_020 0.1042844018 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
5 Hb_055706_010 0.1051784322 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
6 Hb_136027_010 0.1062641756 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_002311_490 0.1081322804 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
8 Hb_158123_010 0.1151673012 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_002660_090 0.1203888444 - - hypothetical protein JCGZ_16500 [Jatropha curcas]
10 Hb_001846_040 0.1204044217 - - cytochrome P450, putative [Ricinus communis]
11 Hb_009707_010 0.1209025985 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]
12 Hb_089140_020 0.1209490176 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
13 Hb_189242_010 0.1227785759 - - hypothetical protein B456_013G0075002, partial [Gossypium raimondii]
14 Hb_001411_150 0.12384157 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
15 Hb_117602_010 0.1240823841 - - dimethylaniline monooxygenase, putative [Ricinus communis]
16 Hb_000016_220 0.1245041831 transcription factor TF Family: AP2 CRT/DRE binding factor 1 [Hevea brasiliensis]
17 Hb_016404_010 0.1245915698 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_027214_060 0.1248464236 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
19 Hb_009247_020 0.126227974 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
20 Hb_000227_410 0.1270097745 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]

Gene co-expression network

sample Hb_035391_010 Hb_035391_010 Hb_003582_020 Hb_003582_020 Hb_035391_010--Hb_003582_020 Hb_000210_150 Hb_000210_150 Hb_035391_010--Hb_000210_150 Hb_025477_020 Hb_025477_020 Hb_035391_010--Hb_025477_020 Hb_055706_010 Hb_055706_010 Hb_035391_010--Hb_055706_010 Hb_136027_010 Hb_136027_010 Hb_035391_010--Hb_136027_010 Hb_002311_490 Hb_002311_490 Hb_035391_010--Hb_002311_490 Hb_001289_030 Hb_001289_030 Hb_003582_020--Hb_001289_030 Hb_003582_020--Hb_025477_020 Hb_002922_010 Hb_002922_010 Hb_003582_020--Hb_002922_010 Hb_003582_020--Hb_136027_010 Hb_001411_150 Hb_001411_150 Hb_003582_020--Hb_001411_150 Hb_000210_150--Hb_025477_020 Hb_004267_070 Hb_004267_070 Hb_000210_150--Hb_004267_070 Hb_158123_010 Hb_158123_010 Hb_000210_150--Hb_158123_010 Hb_027214_060 Hb_027214_060 Hb_000210_150--Hb_027214_060 Hb_000316_150 Hb_000316_150 Hb_000210_150--Hb_000316_150 Hb_025477_020--Hb_002922_010 Hb_009707_010 Hb_009707_010 Hb_025477_020--Hb_009707_010 Hb_025477_020--Hb_001289_030 Hb_001477_080 Hb_001477_080 Hb_025477_020--Hb_001477_080 Hb_005882_020 Hb_005882_020 Hb_055706_010--Hb_005882_020 Hb_089140_020 Hb_089140_020 Hb_055706_010--Hb_089140_020 Hb_000522_120 Hb_000522_120 Hb_055706_010--Hb_000522_120 Hb_189242_010 Hb_189242_010 Hb_055706_010--Hb_189242_010 Hb_048653_040 Hb_048653_040 Hb_055706_010--Hb_048653_040 Hb_016404_010 Hb_016404_010 Hb_136027_010--Hb_016404_010 Hb_009247_020 Hb_009247_020 Hb_136027_010--Hb_009247_020 Hb_001846_040 Hb_001846_040 Hb_136027_010--Hb_001846_040 Hb_000796_200 Hb_000796_200 Hb_136027_010--Hb_000796_200 Hb_000506_140 Hb_000506_140 Hb_002311_490--Hb_000506_140 Hb_000563_460 Hb_000563_460 Hb_002311_490--Hb_000563_460 Hb_002311_490--Hb_158123_010 Hb_174829_040 Hb_174829_040 Hb_002311_490--Hb_174829_040 Hb_000465_330 Hb_000465_330 Hb_002311_490--Hb_000465_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.482197 53.04 7.15135 6.90399 0.342767 0.189587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.084864 0.133507 0.185904 1.59221 0.137855

CAGE analysis