Hb_035524_030

Information

Type -
Description -
Location Contig35524: 11617-14947
Sequence    

Annotation

kegg
ID rcu:RCOM_1278190
description hypothetical protein
nr
ID XP_002527655.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L586
description Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana GN=At4g09580 PE=1 SV=1
trembl
ID B9SNT6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1278190 PE=4 SV=1
Gene Ontology
ID GO:0006661
description uncharacterized membrane protein at4g09580-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36794: 11717-14944
cDNA
(Sanger)
(ID:Location)		 005_C04.ab1: 11719-14060 , 039_A13.ab1: 11755-12083 , 045_D02.ab1: 11718-14049

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035524_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_019613_020 0.0456093952 - - phospholipase C, putative [Ricinus communis]
3 Hb_000085_280 0.0591906062 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
4 Hb_005288_120 0.0719572143 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
5 Hb_000671_100 0.0847674774 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
6 Hb_024714_030 0.0854362603 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
7 Hb_127979_010 0.0907695134 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
8 Hb_010261_020 0.0916883864 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
9 Hb_002290_060 0.095348033 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
10 Hb_002014_080 0.0967236956 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
11 Hb_000700_090 0.0985871979 - - protein with unknown function [Ricinus communis]
12 Hb_005488_070 0.0993492277 - - putative cytochrome P450 [Oryza sativa Japonica Group]
13 Hb_000984_180 0.1005099932 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
14 Hb_002391_110 0.100918749 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
15 Hb_000599_120 0.103527788 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
16 Hb_014568_030 0.103765812 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
17 Hb_003638_140 0.105346037 - - protein binding protein, putative [Ricinus communis]
18 Hb_000057_060 0.1055095632 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
19 Hb_000186_010 0.1056747768 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
20 Hb_000696_110 0.1069933815 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_035524_030 Hb_035524_030 Hb_019613_020 Hb_019613_020 Hb_035524_030--Hb_019613_020 Hb_000085_280 Hb_000085_280 Hb_035524_030--Hb_000085_280 Hb_005288_120 Hb_005288_120 Hb_035524_030--Hb_005288_120 Hb_000671_100 Hb_000671_100 Hb_035524_030--Hb_000671_100 Hb_024714_030 Hb_024714_030 Hb_035524_030--Hb_024714_030 Hb_127979_010 Hb_127979_010 Hb_035524_030--Hb_127979_010 Hb_019613_020--Hb_127979_010 Hb_019613_020--Hb_000085_280 Hb_176022_020 Hb_176022_020 Hb_019613_020--Hb_176022_020 Hb_003404_030 Hb_003404_030 Hb_019613_020--Hb_003404_030 Hb_000057_060 Hb_000057_060 Hb_019613_020--Hb_000057_060 Hb_002290_060 Hb_002290_060 Hb_000085_280--Hb_002290_060 Hb_013405_130 Hb_013405_130 Hb_000085_280--Hb_013405_130 Hb_000085_280--Hb_005288_120 Hb_000186_010 Hb_000186_010 Hb_000085_280--Hb_000186_010 Hb_010261_020 Hb_010261_020 Hb_005288_120--Hb_010261_020 Hb_000017_340 Hb_000017_340 Hb_005288_120--Hb_000017_340 Hb_002014_080 Hb_002014_080 Hb_005288_120--Hb_002014_080 Hb_005288_120--Hb_000671_100 Hb_000671_100--Hb_024714_030 Hb_000671_100--Hb_002014_080 Hb_010298_010 Hb_010298_010 Hb_000671_100--Hb_010298_010 Hb_014568_030 Hb_014568_030 Hb_000671_100--Hb_014568_030 Hb_009558_020 Hb_009558_020 Hb_000671_100--Hb_009558_020 Hb_024714_030--Hb_002014_080 Hb_003638_140 Hb_003638_140 Hb_024714_030--Hb_003638_140 Hb_024714_030--Hb_014568_030 Hb_002215_050 Hb_002215_050 Hb_024714_030--Hb_002215_050 Hb_000176_140 Hb_000176_140 Hb_127979_010--Hb_000176_140 Hb_001433_170 Hb_001433_170 Hb_127979_010--Hb_001433_170 Hb_127979_010--Hb_000057_060 Hb_002391_110 Hb_002391_110 Hb_127979_010--Hb_002391_110 Hb_026048_090 Hb_026048_090 Hb_127979_010--Hb_026048_090 Hb_127979_010--Hb_003404_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
325.689 48.9933 20.313 48.2335 317.525 562.404
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
309.852 110.141 270.066 74.8298 32.2558

CAGE analysis