Hb_035651_010

Information

Type -
Description -
Location Contig35651: 4307-7766
Sequence    

Annotation

kegg
ID rcu:RCOM_0901450
description receptor-kinase, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_002517677.1
description receptor-kinase, putative [Ricinus communis]
swissprot
ID C0LGT6
description LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1
trembl
ID K7LFB5
description Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36821: 4376-4842 , PASA_asmbl_36823: 7353-8194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035651_010 0.0 - - receptor-kinase, putative [Ricinus communis]
2 Hb_004520_010 0.1212224357 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
3 Hb_004312_020 0.12265319 - - conserved hypothetical protein [Ricinus communis]
4 Hb_020831_070 0.1250584392 - - hypothetical protein VITISV_027174 [Vitis vinifera]
5 Hb_003994_070 0.127374525 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
6 Hb_009851_090 0.1280851759 - - Protein ABIL2, putative [Ricinus communis]
7 Hb_005920_030 0.1326079145 - - putative polyprotein [Oryza sativa Japonica Group]
8 Hb_008834_010 0.1354199686 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
9 Hb_000260_730 0.1379010195 - - -
10 Hb_000123_340 0.1386006895 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
11 Hb_043792_030 0.1415150815 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
12 Hb_019654_170 0.1464521237 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
13 Hb_017225_030 0.1466838966 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
14 Hb_001856_280 0.1494179488 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
15 Hb_000820_100 0.1500737291 - - RNA-directed DNA polymerase [Arachis hypogaea]
16 Hb_001385_070 0.1506800612 - - hypothetical protein VITISV_019194 [Vitis vinifera]
17 Hb_003311_020 0.1511980927 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001345_040 0.1524683059 - - hypothetical protein VITISV_015004 [Vitis vinifera]
19 Hb_001793_040 0.1559813259 - - hypothetical protein VITISV_006810 [Vitis vinifera]
20 Hb_011649_030 0.1571739123 - - hypothetical protein [Vitis hybrid cultivar]

Gene co-expression network

sample Hb_035651_010 Hb_035651_010 Hb_004520_010 Hb_004520_010 Hb_035651_010--Hb_004520_010 Hb_004312_020 Hb_004312_020 Hb_035651_010--Hb_004312_020 Hb_020831_070 Hb_020831_070 Hb_035651_010--Hb_020831_070 Hb_003994_070 Hb_003994_070 Hb_035651_010--Hb_003994_070 Hb_009851_090 Hb_009851_090 Hb_035651_010--Hb_009851_090 Hb_005920_030 Hb_005920_030 Hb_035651_010--Hb_005920_030 Hb_000820_100 Hb_000820_100 Hb_004520_010--Hb_000820_100 Hb_001385_070 Hb_001385_070 Hb_004520_010--Hb_001385_070 Hb_004520_010--Hb_005920_030 Hb_000123_340 Hb_000123_340 Hb_004520_010--Hb_000123_340 Hb_007543_020 Hb_007543_020 Hb_004520_010--Hb_007543_020 Hb_001345_040 Hb_001345_040 Hb_004312_020--Hb_001345_040 Hb_008834_010 Hb_008834_010 Hb_004312_020--Hb_008834_010 Hb_001366_260 Hb_001366_260 Hb_004312_020--Hb_001366_260 Hb_001468_040 Hb_001468_040 Hb_004312_020--Hb_001468_040 Hb_188075_010 Hb_188075_010 Hb_004312_020--Hb_188075_010 Hb_006455_020 Hb_006455_020 Hb_020831_070--Hb_006455_020 Hb_043792_030 Hb_043792_030 Hb_020831_070--Hb_043792_030 Hb_001856_280 Hb_001856_280 Hb_020831_070--Hb_001856_280 Hb_019654_170 Hb_019654_170 Hb_020831_070--Hb_019654_170 Hb_003311_020 Hb_003311_020 Hb_020831_070--Hb_003311_020 Hb_003994_070--Hb_009851_090 Hb_003994_070--Hb_003311_020 Hb_155423_010 Hb_155423_010 Hb_003994_070--Hb_155423_010 Hb_003994_070--Hb_005920_030 Hb_001250_030 Hb_001250_030 Hb_003994_070--Hb_001250_030 Hb_032016_010 Hb_032016_010 Hb_009851_090--Hb_032016_010 Hb_009851_090--Hb_003311_020 Hb_009851_090--Hb_155423_010 Hb_002631_270 Hb_002631_270 Hb_009851_090--Hb_002631_270 Hb_000567_270 Hb_000567_270 Hb_009851_090--Hb_000567_270 Hb_008055_030 Hb_008055_030 Hb_005920_030--Hb_008055_030 Hb_005920_030--Hb_001856_280 Hb_005920_030--Hb_043792_030 Hb_005920_030--Hb_003311_020 Hb_005920_030--Hb_019654_170 Hb_005920_030--Hb_000567_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.467991 0.351739 0.348195 0 0.0280587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0550796 0.021672 0.020745 0.932371 3.44785

CAGE analysis