Hb_035746_010

Information

Type -
Description -
Location Contig35746: 10-628
Sequence    

Annotation

kegg
ID mdm:103428670
description G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1
nr
ID XP_012084625.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
swissprot
ID Q9SY89
description Putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 OS=Arabidopsis thaliana GN=At1g61610 PE=3 SV=1
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0005622
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035746_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
2 Hb_003746_060 0.2036007278 - - PREDICTED: DTW domain-containing protein 2 [Jatropha curcas]
3 Hb_021576_060 0.2112499062 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007333_010 0.2233638809 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_005511_100 0.2260376953 - - PREDICTED: uncharacterized protein LOC105645493 isoform X1 [Jatropha curcas]
6 Hb_029888_020 0.2264412855 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
7 Hb_003446_050 0.2265246798 - - hypothetical protein B456_002G034000, partial [Gossypium raimondii]
8 Hb_000381_080 0.2283332455 transcription factor TF Family: SNF2 PREDICTED: DNA repair protein RAD16 [Jatropha curcas]
9 Hb_002821_010 0.232007 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
10 Hb_002045_140 0.2328340322 - - histone acetyltransferase, partial [Triticum aestivum]
11 Hb_003061_010 0.2332973975 - - hypothetical protein SORBIDRAFT_01g039870 [Sorghum bicolor]
12 Hb_000268_010 0.2361436202 - - conserved hypothetical protein [Ricinus communis]
13 Hb_042404_010 0.2387100932 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
14 Hb_003029_080 0.2396501001 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
15 Hb_120221_010 0.2402275329 - - -
16 Hb_004807_060 0.2410968698 - - -
17 Hb_002498_180 0.2458427167 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
18 Hb_000331_310 0.2460358822 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
19 Hb_029982_010 0.2496560546 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
20 Hb_002742_050 0.2498970102 - - hypothetical protein CICLE_v10002863mg [Citrus clementina]

Gene co-expression network

sample Hb_035746_010 Hb_035746_010 Hb_003746_060 Hb_003746_060 Hb_035746_010--Hb_003746_060 Hb_021576_060 Hb_021576_060 Hb_035746_010--Hb_021576_060 Hb_007333_010 Hb_007333_010 Hb_035746_010--Hb_007333_010 Hb_005511_100 Hb_005511_100 Hb_035746_010--Hb_005511_100 Hb_029888_020 Hb_029888_020 Hb_035746_010--Hb_029888_020 Hb_003446_050 Hb_003446_050 Hb_035746_010--Hb_003446_050 Hb_000617_320 Hb_000617_320 Hb_003746_060--Hb_000617_320 Hb_000094_020 Hb_000094_020 Hb_003746_060--Hb_000094_020 Hb_000193_350 Hb_000193_350 Hb_003746_060--Hb_000193_350 Hb_003746_060--Hb_029888_020 Hb_011257_010 Hb_011257_010 Hb_003746_060--Hb_011257_010 Hb_000995_050 Hb_000995_050 Hb_003746_060--Hb_000995_050 Hb_027472_030 Hb_027472_030 Hb_021576_060--Hb_027472_030 Hb_000331_500 Hb_000331_500 Hb_021576_060--Hb_000331_500 Hb_012052_010 Hb_012052_010 Hb_021576_060--Hb_012052_010 Hb_120221_010 Hb_120221_010 Hb_021576_060--Hb_120221_010 Hb_001824_020 Hb_001824_020 Hb_021576_060--Hb_001824_020 Hb_082407_010 Hb_082407_010 Hb_007333_010--Hb_082407_010 Hb_000268_010 Hb_000268_010 Hb_007333_010--Hb_000268_010 Hb_007123_060 Hb_007123_060 Hb_007333_010--Hb_007123_060 Hb_008442_010 Hb_008442_010 Hb_007333_010--Hb_008442_010 Hb_000264_290 Hb_000264_290 Hb_007333_010--Hb_000264_290 Hb_133311_010 Hb_133311_010 Hb_007333_010--Hb_133311_010 Hb_007441_210 Hb_007441_210 Hb_005511_100--Hb_007441_210 Hb_009486_150 Hb_009486_150 Hb_005511_100--Hb_009486_150 Hb_007229_070 Hb_007229_070 Hb_005511_100--Hb_007229_070 Hb_000565_030 Hb_000565_030 Hb_005511_100--Hb_000565_030 Hb_007558_010 Hb_007558_010 Hb_005511_100--Hb_007558_010 Hb_017469_020 Hb_017469_020 Hb_005511_100--Hb_017469_020 Hb_086703_010 Hb_086703_010 Hb_029888_020--Hb_086703_010 Hb_004807_060 Hb_004807_060 Hb_029888_020--Hb_004807_060 Hb_029888_020--Hb_000193_350 Hb_017711_010 Hb_017711_010 Hb_029888_020--Hb_017711_010 Hb_004502_080 Hb_004502_080 Hb_029888_020--Hb_004502_080 Hb_000326_060 Hb_000326_060 Hb_003446_050--Hb_000326_060 Hb_132998_020 Hb_132998_020 Hb_003446_050--Hb_132998_020 Hb_007617_020 Hb_007617_020 Hb_003446_050--Hb_007617_020 Hb_079268_010 Hb_079268_010 Hb_003446_050--Hb_079268_010 Hb_012033_020 Hb_012033_020 Hb_003446_050--Hb_012033_020 Hb_064264_010 Hb_064264_010 Hb_003446_050--Hb_064264_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.712971 0.681474 0.0874212 0.208521 0.369856 1.43042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.901003 1.82025 0 0.293593 0

CAGE analysis