Hb_035755_010

Information

Type -
Description -
Location Contig35755: 2462-3015
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17010g
description POPTRDRAFT_247179; RNA recognition motif containing family protein
nr
ID ABK93989.1
description unknown [Populus trichocarpa]
swissprot
ID Q8LPQ9
description Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA PE=2 SV=2
trembl
ID A9PC86
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0000166
description flowering time control protein fpa

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36854: 2607-3193
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035755_010 0.0 - - unknown [Populus trichocarpa]
2 Hb_000753_200 0.0857957328 - - PREDICTED: putative ATP-dependent helicase hrq1 [Jatropha curcas]
3 Hb_001014_160 0.0858053358 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
4 Hb_008785_040 0.0874083327 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
5 Hb_001123_260 0.0891284505 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
6 Hb_004963_030 0.090102278 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_010710_070 0.091406832 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
8 Hb_003847_130 0.0915140251 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
9 Hb_002154_100 0.0935902963 - - PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
10 Hb_021443_040 0.0936930213 - - acc synthase, putative [Ricinus communis]
11 Hb_005253_030 0.0955218524 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_006915_070 0.096500406 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
13 Hb_001008_120 0.0975284277 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
14 Hb_003929_110 0.097730407 - - PREDICTED: probable GTP diphosphokinase CRSH, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000317_050 0.0979218928 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
16 Hb_000281_090 0.0979704155 transcription factor TF Family: SNF2 hypothetical protein PRUPE_ppa000063mg [Prunus persica]
17 Hb_004310_140 0.0981083166 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
18 Hb_003794_010 0.099317083 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
19 Hb_000538_160 0.1000830629 - - PREDICTED: RNA-binding protein 5 isoform X3 [Jatropha curcas]
20 Hb_004097_050 0.1004681132 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_035755_010 Hb_035755_010 Hb_000753_200 Hb_000753_200 Hb_035755_010--Hb_000753_200 Hb_001014_160 Hb_001014_160 Hb_035755_010--Hb_001014_160 Hb_008785_040 Hb_008785_040 Hb_035755_010--Hb_008785_040 Hb_001123_260 Hb_001123_260 Hb_035755_010--Hb_001123_260 Hb_004963_030 Hb_004963_030 Hb_035755_010--Hb_004963_030 Hb_010710_070 Hb_010710_070 Hb_035755_010--Hb_010710_070 Hb_000265_230 Hb_000265_230 Hb_000753_200--Hb_000265_230 Hb_006816_430 Hb_006816_430 Hb_000753_200--Hb_006816_430 Hb_000920_060 Hb_000920_060 Hb_000753_200--Hb_000920_060 Hb_000160_210 Hb_000160_210 Hb_000753_200--Hb_000160_210 Hb_000753_200--Hb_001123_260 Hb_002154_100 Hb_002154_100 Hb_001014_160--Hb_002154_100 Hb_001014_160--Hb_004963_030 Hb_007390_010 Hb_007390_010 Hb_001014_160--Hb_007390_010 Hb_001442_040 Hb_001442_040 Hb_001014_160--Hb_001442_040 Hb_000331_260 Hb_000331_260 Hb_001014_160--Hb_000331_260 Hb_110291_010 Hb_110291_010 Hb_001014_160--Hb_110291_010 Hb_002681_070 Hb_002681_070 Hb_008785_040--Hb_002681_070 Hb_005496_130 Hb_005496_130 Hb_008785_040--Hb_005496_130 Hb_006915_070 Hb_006915_070 Hb_008785_040--Hb_006915_070 Hb_008785_040--Hb_002154_100 Hb_004100_080 Hb_004100_080 Hb_008785_040--Hb_004100_080 Hb_000856_110 Hb_000856_110 Hb_008785_040--Hb_000856_110 Hb_005779_080 Hb_005779_080 Hb_001123_260--Hb_005779_080 Hb_005489_020 Hb_005489_020 Hb_001123_260--Hb_005489_020 Hb_021443_040 Hb_021443_040 Hb_001123_260--Hb_021443_040 Hb_001123_260--Hb_006816_430 Hb_007943_110 Hb_007943_110 Hb_001123_260--Hb_007943_110 Hb_004097_070 Hb_004097_070 Hb_001123_260--Hb_004097_070 Hb_004963_030--Hb_010710_070 Hb_004963_030--Hb_001442_040 Hb_188063_020 Hb_188063_020 Hb_004963_030--Hb_188063_020 Hb_028912_050 Hb_028912_050 Hb_004963_030--Hb_028912_050 Hb_000343_250 Hb_000343_250 Hb_004963_030--Hb_000343_250 Hb_010710_070--Hb_028912_050 Hb_010710_070--Hb_188063_020 Hb_004994_380 Hb_004994_380 Hb_010710_070--Hb_004994_380 Hb_002849_100 Hb_002849_100 Hb_010710_070--Hb_002849_100 Hb_010710_070--Hb_001442_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0216 6.35716 5.29593 3.75985 9.56416 10.4322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.99338 8.40406 5.26358 8.17533 14.0516

CAGE analysis