Hb_036227_010

Information

Type -
Description -
Location Contig36227: 116-865
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036227_010 0.0 - - -
2 Hb_000504_170 0.1624528503 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
3 Hb_007778_020 0.1663399245 - - -
4 Hb_107847_010 0.1725717759 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
5 Hb_000258_320 0.1771797676 - - -
6 Hb_020730_010 0.1814592046 - - hypothetical protein CICLE_v10010243mg, partial [Citrus clementina]
7 Hb_014720_170 0.1831152064 - - glutaredoxin-1, grx1, putative [Ricinus communis]
8 Hb_007083_010 0.1896489493 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
9 Hb_007123_070 0.1975671622 - - -
10 Hb_000107_170 0.1988202739 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
11 Hb_089889_020 0.2021916779 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
12 Hb_000003_150 0.2031532802 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
13 Hb_000169_190 0.2071596755 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
14 Hb_000175_090 0.208531888 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009838_130 0.2086745992 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
16 Hb_004048_140 0.2087533922 - - -
17 Hb_141532_010 0.2107137049 - - PREDICTED: protein SMG9-like [Jatropha curcas]
18 Hb_002292_010 0.2113600092 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
19 Hb_156144_030 0.2120155438 - - hypothetical protein RCOM_0187400 [Ricinus communis]
20 Hb_121729_020 0.2131966738 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_036227_010 Hb_036227_010 Hb_000504_170 Hb_000504_170 Hb_036227_010--Hb_000504_170 Hb_007778_020 Hb_007778_020 Hb_036227_010--Hb_007778_020 Hb_107847_010 Hb_107847_010 Hb_036227_010--Hb_107847_010 Hb_000258_320 Hb_000258_320 Hb_036227_010--Hb_000258_320 Hb_020730_010 Hb_020730_010 Hb_036227_010--Hb_020730_010 Hb_014720_170 Hb_014720_170 Hb_036227_010--Hb_014720_170 Hb_001922_130 Hb_001922_130 Hb_000504_170--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_000504_170--Hb_000186_260 Hb_009178_020 Hb_009178_020 Hb_000504_170--Hb_009178_020 Hb_007083_010 Hb_007083_010 Hb_000504_170--Hb_007083_010 Hb_121729_020 Hb_121729_020 Hb_000504_170--Hb_121729_020 Hb_007416_200 Hb_007416_200 Hb_000504_170--Hb_007416_200 Hb_000175_090 Hb_000175_090 Hb_007778_020--Hb_000175_090 Hb_007778_020--Hb_000504_170 Hb_007778_020--Hb_000258_320 Hb_007778_020--Hb_014720_170 Hb_007778_020--Hb_007083_010 Hb_003297_010 Hb_003297_010 Hb_007778_020--Hb_003297_010 Hb_000996_180 Hb_000996_180 Hb_107847_010--Hb_000996_180 Hb_089889_020 Hb_089889_020 Hb_107847_010--Hb_089889_020 Hb_009838_130 Hb_009838_130 Hb_107847_010--Hb_009838_130 Hb_107847_010--Hb_000504_170 Hb_009693_030 Hb_009693_030 Hb_107847_010--Hb_009693_030 Hb_000264_060 Hb_000264_060 Hb_107847_010--Hb_000264_060 Hb_000169_190 Hb_000169_190 Hb_000258_320--Hb_000169_190 Hb_035318_010 Hb_035318_010 Hb_000258_320--Hb_035318_010 Hb_000258_320--Hb_000504_170 Hb_000258_320--Hb_007083_010 Hb_000258_320--Hb_014720_170 Hb_000258_320--Hb_000996_180 Hb_002843_100 Hb_002843_100 Hb_020730_010--Hb_002843_100 Hb_179511_010 Hb_179511_010 Hb_020730_010--Hb_179511_010 Hb_000482_110 Hb_000482_110 Hb_020730_010--Hb_000482_110 Hb_002141_020 Hb_002141_020 Hb_020730_010--Hb_002141_020 Hb_001754_170 Hb_001754_170 Hb_020730_010--Hb_001754_170 Hb_014720_170--Hb_007083_010 Hb_001135_020 Hb_001135_020 Hb_014720_170--Hb_001135_020 Hb_001828_200 Hb_001828_200 Hb_014720_170--Hb_001828_200 Hb_002292_010 Hb_002292_010 Hb_014720_170--Hb_002292_010 Hb_002026_140 Hb_002026_140 Hb_014720_170--Hb_002026_140 Hb_014720_170--Hb_000504_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.963531 0.50071 0.426253 0.199136 0.7887 0.475904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.246205 0.580371 0 0.085029 0

CAGE analysis