Hb_036388_010

Information

Type -
Description -
Location Contig36388: 10710-15515
Sequence    

Annotation

kegg
ID pop:POPTR_0001s04800g
description POPTRDRAFT_829297; 10-formyltetrahydrofolate synthetase family protein
nr
ID XP_011037957.1
description PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
swissprot
ID P28723
description Formate--tetrahydrofolate ligase OS=Spinacia oleracea PE=1 SV=3
trembl
ID B9GLK3
description 10-formyltetrahydrofolate synthetase family protein OS=Populus trichocarpa GN=POPTR_0001s04800g PE=3 SV=1
Gene Ontology
ID GO:0005829
description formate--tetrahydrofolate ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37421: 10683-15512
cDNA
(Sanger)
(ID:Location)		 020_N01.ab1: 13682-15510 , 032_G02.ab1: 13770-15510 , 033_H12.ab1: 13805-15510 , 041_F04.ab1: 13835-15510 , 045_K23.ab1: 13744-15510

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036388_010 0.0 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
2 Hb_000768_150 0.0915511405 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
3 Hb_035834_010 0.0934592456 - - zinc finger protein, putative [Ricinus communis]
4 Hb_003783_050 0.0954300344 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000997_320 0.1003923384 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
6 Hb_006736_050 0.1031660044 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
7 Hb_000417_380 0.1059035519 - - SecY protein transport family protein [Theobroma cacao]
8 Hb_000120_740 0.109430247 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
9 Hb_189003_070 0.1101449894 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
10 Hb_012053_020 0.1144912703 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
11 Hb_004032_110 0.1199109459 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
12 Hb_004326_010 0.1214360278 - - cationic amino acid transporter, putative [Ricinus communis]
13 Hb_000077_310 0.1243857609 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
14 Hb_000580_110 0.1277100938 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
15 Hb_030312_030 0.1282868654 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
16 Hb_001894_010 0.129602671 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
17 Hb_009803_020 0.1296788114 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]
18 Hb_033683_010 0.1305459941 - - myo inositol monophosphatase, putative [Ricinus communis]
19 Hb_000941_120 0.1312483005 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
20 Hb_005276_070 0.1389921347 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_036388_010 Hb_036388_010 Hb_000768_150 Hb_000768_150 Hb_036388_010--Hb_000768_150 Hb_035834_010 Hb_035834_010 Hb_036388_010--Hb_035834_010 Hb_003783_050 Hb_003783_050 Hb_036388_010--Hb_003783_050 Hb_000997_320 Hb_000997_320 Hb_036388_010--Hb_000997_320 Hb_006736_050 Hb_006736_050 Hb_036388_010--Hb_006736_050 Hb_000417_380 Hb_000417_380 Hb_036388_010--Hb_000417_380 Hb_030312_030 Hb_030312_030 Hb_000768_150--Hb_030312_030 Hb_012053_020 Hb_012053_020 Hb_000768_150--Hb_012053_020 Hb_009803_020 Hb_009803_020 Hb_000768_150--Hb_009803_020 Hb_004326_010 Hb_004326_010 Hb_000768_150--Hb_004326_010 Hb_000768_150--Hb_000997_320 Hb_000445_370 Hb_000445_370 Hb_035834_010--Hb_000445_370 Hb_035834_010--Hb_003783_050 Hb_000441_050 Hb_000441_050 Hb_035834_010--Hb_000441_050 Hb_004242_170 Hb_004242_170 Hb_035834_010--Hb_004242_170 Hb_000120_740 Hb_000120_740 Hb_035834_010--Hb_000120_740 Hb_000941_120 Hb_000941_120 Hb_003783_050--Hb_000941_120 Hb_003783_050--Hb_030312_030 Hb_001916_150 Hb_001916_150 Hb_003783_050--Hb_001916_150 Hb_003783_050--Hb_000445_370 Hb_001195_370 Hb_001195_370 Hb_000997_320--Hb_001195_370 Hb_000997_320--Hb_030312_030 Hb_001054_060 Hb_001054_060 Hb_000997_320--Hb_001054_060 Hb_000329_080 Hb_000329_080 Hb_000997_320--Hb_000329_080 Hb_189003_070 Hb_189003_070 Hb_006736_050--Hb_189003_070 Hb_006120_060 Hb_006120_060 Hb_006736_050--Hb_006120_060 Hb_006736_050--Hb_000768_150 Hb_006736_050--Hb_000120_740 Hb_000283_140 Hb_000283_140 Hb_006736_050--Hb_000283_140 Hb_000580_110 Hb_000580_110 Hb_000417_380--Hb_000580_110 Hb_000236_180 Hb_000236_180 Hb_000417_380--Hb_000236_180 Hb_000417_380--Hb_189003_070 Hb_000077_310 Hb_000077_310 Hb_000417_380--Hb_000077_310 Hb_000417_380--Hb_003783_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.40239 12.4273 39.9434 80.8778 4.34924 5.93677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.77156 5.31219 7.22972 42.1059 79.5015

CAGE analysis