Hb_036568_010

Information

Type transcription factor
Description TF Family: GRAS
Location Contig36568: 6880-8205
Sequence    

Annotation

kegg
ID tcc:TCM_002021
description SCL domain class transcription factor
nr
ID XP_012081040.1
description PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
swissprot
ID Q9FHZ1
description Scarecrow-like protein 23 OS=Arabidopsis thaliana GN=SCL23 PE=1 SV=1
trembl
ID A0A067K5Y2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16682 PE=4 SV=1
Gene Ontology
ID GO:0003700
description scarecrow-like protein 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37657: 6786-7109
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036568_010 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
2 Hb_001410_010 0.1331595468 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
3 Hb_001446_060 0.1367652682 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_000473_150 0.1418289889 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]
5 Hb_000997_340 0.1478683701 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
6 Hb_000544_020 0.14939259 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
7 Hb_004994_300 0.149490381 - - synaptotagmin, putative [Ricinus communis]
8 Hb_158696_010 0.1499757078 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
9 Hb_000216_020 0.1506726654 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
10 Hb_004013_020 0.1534284259 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
11 Hb_060909_010 0.1541873651 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
12 Hb_155150_010 0.1563521551 - - kinase, putative [Ricinus communis]
13 Hb_000107_560 0.1566154728 - - glutamate receptor 3 plant, putative [Ricinus communis]
14 Hb_011310_200 0.1573590314 - - grr1, plant, putative [Ricinus communis]
15 Hb_000233_100 0.1583307628 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
16 Hb_000413_250 0.159168903 - - Cysteine-rich RLK 29 [Theobroma cacao]
17 Hb_001408_150 0.1603708237 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
18 Hb_000059_130 0.1614708339 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
19 Hb_172421_010 0.1646556106 - - cysteine protease [Hevea brasiliensis]
20 Hb_089100_040 0.1649073551 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]

Gene co-expression network

sample Hb_036568_010 Hb_036568_010 Hb_001410_010 Hb_001410_010 Hb_036568_010--Hb_001410_010 Hb_001446_060 Hb_001446_060 Hb_036568_010--Hb_001446_060 Hb_000473_150 Hb_000473_150 Hb_036568_010--Hb_000473_150 Hb_000997_340 Hb_000997_340 Hb_036568_010--Hb_000997_340 Hb_000544_020 Hb_000544_020 Hb_036568_010--Hb_000544_020 Hb_004994_300 Hb_004994_300 Hb_036568_010--Hb_004994_300 Hb_002218_070 Hb_002218_070 Hb_001410_010--Hb_002218_070 Hb_057079_020 Hb_057079_020 Hb_001410_010--Hb_057079_020 Hb_011310_200 Hb_011310_200 Hb_001410_010--Hb_011310_200 Hb_000236_110 Hb_000236_110 Hb_001410_010--Hb_000236_110 Hb_002928_180 Hb_002928_180 Hb_001410_010--Hb_002928_180 Hb_001898_020 Hb_001898_020 Hb_001446_060--Hb_001898_020 Hb_005000_090 Hb_005000_090 Hb_001446_060--Hb_005000_090 Hb_001430_100 Hb_001430_100 Hb_001446_060--Hb_001430_100 Hb_155150_010 Hb_155150_010 Hb_001446_060--Hb_155150_010 Hb_102763_010 Hb_102763_010 Hb_001446_060--Hb_102763_010 Hb_000492_080 Hb_000492_080 Hb_001446_060--Hb_000492_080 Hb_019863_060 Hb_019863_060 Hb_000473_150--Hb_019863_060 Hb_000059_130 Hb_000059_130 Hb_000473_150--Hb_000059_130 Hb_000413_250 Hb_000413_250 Hb_000473_150--Hb_000413_250 Hb_001951_100 Hb_001951_100 Hb_000473_150--Hb_001951_100 Hb_000445_130 Hb_000445_130 Hb_000473_150--Hb_000445_130 Hb_002918_320 Hb_002918_320 Hb_000473_150--Hb_002918_320 Hb_000100_210 Hb_000100_210 Hb_000997_340--Hb_000100_210 Hb_052117_010 Hb_052117_010 Hb_000997_340--Hb_052117_010 Hb_001522_040 Hb_001522_040 Hb_000997_340--Hb_001522_040 Hb_000997_340--Hb_001898_020 Hb_001832_210 Hb_001832_210 Hb_000997_340--Hb_001832_210 Hb_000950_040 Hb_000950_040 Hb_000997_340--Hb_000950_040 Hb_060909_010 Hb_060909_010 Hb_000544_020--Hb_060909_010 Hb_158696_010 Hb_158696_010 Hb_000544_020--Hb_158696_010 Hb_000984_100 Hb_000984_100 Hb_000544_020--Hb_000984_100 Hb_004648_100 Hb_004648_100 Hb_000544_020--Hb_004648_100 Hb_001248_110 Hb_001248_110 Hb_000544_020--Hb_001248_110 Hb_000532_130 Hb_000532_130 Hb_000544_020--Hb_000532_130 Hb_003605_220 Hb_003605_220 Hb_004994_300--Hb_003605_220 Hb_007313_070 Hb_007313_070 Hb_004994_300--Hb_007313_070 Hb_000270_230 Hb_000270_230 Hb_004994_300--Hb_000270_230 Hb_172421_010 Hb_172421_010 Hb_004994_300--Hb_172421_010 Hb_004032_310 Hb_004032_310 Hb_004994_300--Hb_004032_310 Hb_003752_120 Hb_003752_120 Hb_004994_300--Hb_003752_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.45174 23.7243 2.63083 11.4629 3.05874 3.16011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.61272 0.680482 1.32496 7.7668 9.9687

CAGE analysis