Hb_036790_030

Information

Type -
Description -
Location Contig36790: 28855-31645
Sequence    

Annotation

kegg
ID rcu:RCOM_0296610
description hypothetical protein
nr
ID XP_012074452.1
description PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
swissprot
ID Q32PP1
description UPF0544 protein C5orf45 homolog OS=Danio rerio GN=zgc:123335 PE=2 SV=1
trembl
ID B9SM75
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0296610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37792: 28780-31381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036790_030 0.0 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
2 Hb_010998_050 0.123479694 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
3 Hb_000345_130 0.1486101848 - - unnamed protein product [Coffea canephora]
4 Hb_002307_020 0.1622650932 - - PREDICTED: histone H1-like [Jatropha curcas]
5 Hb_000739_270 0.1707313436 - - PREDICTED: serine/threonine-protein kinase Aurora-3 [Jatropha curcas]
6 Hb_002007_040 0.1739991999 - - unnamed protein product [Coffea canephora]
7 Hb_000349_230 0.174145334 - - PREDICTED: protein TPX2 [Jatropha curcas]
8 Hb_001507_080 0.1745078152 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
9 Hb_002007_280 0.1766032384 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
10 Hb_000640_050 0.1785429861 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
11 Hb_004162_230 0.1792623595 - - PREDICTED: histone H2B [Jatropha curcas]
12 Hb_000321_080 0.1796362699 - - histone H4 [Zea mays]
13 Hb_000345_410 0.1833071076 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
14 Hb_114310_120 0.1899120565 - - PREDICTED: 50S ribosomal protein L31, chloroplastic [Eucalyptus grandis]
15 Hb_084230_010 0.1924160914 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
16 Hb_005162_130 0.1925190499 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
17 Hb_003399_100 0.1950142181 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
18 Hb_000684_120 0.1966603026 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
19 Hb_008994_010 0.2009565304 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
20 Hb_006275_060 0.2012519596 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]

Gene co-expression network

sample Hb_036790_030 Hb_036790_030 Hb_010998_050 Hb_010998_050 Hb_036790_030--Hb_010998_050 Hb_000345_130 Hb_000345_130 Hb_036790_030--Hb_000345_130 Hb_002307_020 Hb_002307_020 Hb_036790_030--Hb_002307_020 Hb_000739_270 Hb_000739_270 Hb_036790_030--Hb_000739_270 Hb_002007_040 Hb_002007_040 Hb_036790_030--Hb_002007_040 Hb_000349_230 Hb_000349_230 Hb_036790_030--Hb_000349_230 Hb_000345_410 Hb_000345_410 Hb_010998_050--Hb_000345_410 Hb_002007_280 Hb_002007_280 Hb_010998_050--Hb_002007_280 Hb_010998_050--Hb_000349_230 Hb_010998_050--Hb_000345_130 Hb_005162_130 Hb_005162_130 Hb_010998_050--Hb_005162_130 Hb_000345_130--Hb_002007_280 Hb_000345_130--Hb_005162_130 Hb_000345_130--Hb_000349_230 Hb_000345_130--Hb_000345_410 Hb_006275_060 Hb_006275_060 Hb_002307_020--Hb_006275_060 Hb_002307_020--Hb_002007_040 Hb_000051_080 Hb_000051_080 Hb_002307_020--Hb_000051_080 Hb_003784_040 Hb_003784_040 Hb_002307_020--Hb_003784_040 Hb_000155_150 Hb_000155_150 Hb_002307_020--Hb_000155_150 Hb_001780_080 Hb_001780_080 Hb_002307_020--Hb_001780_080 Hb_004162_230 Hb_004162_230 Hb_000739_270--Hb_004162_230 Hb_008994_010 Hb_008994_010 Hb_000739_270--Hb_008994_010 Hb_000739_270--Hb_000345_130 Hb_008406_100 Hb_008406_100 Hb_000739_270--Hb_008406_100 Hb_000739_270--Hb_010998_050 Hb_002007_040--Hb_000051_080 Hb_001478_020 Hb_001478_020 Hb_002007_040--Hb_001478_020 Hb_005725_150 Hb_005725_150 Hb_002007_040--Hb_005725_150 Hb_001501_070 Hb_001501_070 Hb_002007_040--Hb_001501_070 Hb_002007_040--Hb_003784_040 Hb_000349_230--Hb_002007_280 Hb_000349_230--Hb_005162_130 Hb_000349_230--Hb_000345_410 Hb_029510_130 Hb_029510_130 Hb_000349_230--Hb_029510_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.27994 0.113825 4.537 1.13529 0.480936 0.191823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.677109 0.69213 0.0962848 0.172414 0.320542

CAGE analysis