Hb_036790_080

Information

Type -
Description -
Location Contig36790: 72484-77717
Sequence    

Annotation

kegg
ID tcc:TCM_035812
description DEAD-box ATP-dependent RNA helicase 39 isoform 1
nr
ID XP_012086019.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
swissprot
ID Q56X76
description DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana GN=RH39 PE=2 SV=2
trembl
ID A0A067K314
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22268 PE=4 SV=1
Gene Ontology
ID GO:0009507
description dead-box atp-dependent rna helicase 39

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37793: 72490-72865 , PASA_asmbl_37794: 73486-77675 , PASA_asmbl_37795: 75524-75685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036790_080 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
2 Hb_005253_030 0.0556495721 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_032920_050 0.0635276008 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
4 Hb_000261_060 0.069372368 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
5 Hb_003020_030 0.0788593454 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
6 Hb_000130_320 0.0827098883 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
7 Hb_001435_030 0.0836959382 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
8 Hb_000224_160 0.0844885614 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_000087_140 0.0854670985 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
10 Hb_003376_230 0.0872548178 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
11 Hb_000479_250 0.0878810203 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
12 Hb_001008_120 0.0885047849 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
13 Hb_010710_070 0.0888545915 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
14 Hb_007922_020 0.0890594572 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
15 Hb_021346_030 0.0903900432 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
16 Hb_002758_010 0.0913504532 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
17 Hb_001936_090 0.0920502887 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
18 Hb_003994_110 0.0922669351 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
19 Hb_000181_240 0.0923419028 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
20 Hb_001014_160 0.0925680702 - - hypothetical protein JCGZ_23092 [Jatropha curcas]

Gene co-expression network

sample Hb_036790_080 Hb_036790_080 Hb_005253_030 Hb_005253_030 Hb_036790_080--Hb_005253_030 Hb_032920_050 Hb_032920_050 Hb_036790_080--Hb_032920_050 Hb_000261_060 Hb_000261_060 Hb_036790_080--Hb_000261_060 Hb_003020_030 Hb_003020_030 Hb_036790_080--Hb_003020_030 Hb_000130_320 Hb_000130_320 Hb_036790_080--Hb_000130_320 Hb_001435_030 Hb_001435_030 Hb_036790_080--Hb_001435_030 Hb_001008_120 Hb_001008_120 Hb_005253_030--Hb_001008_120 Hb_005253_030--Hb_000261_060 Hb_001936_090 Hb_001936_090 Hb_005253_030--Hb_001936_090 Hb_000465_190 Hb_000465_190 Hb_005253_030--Hb_000465_190 Hb_002758_010 Hb_002758_010 Hb_005253_030--Hb_002758_010 Hb_032920_050--Hb_000130_320 Hb_000613_110 Hb_000613_110 Hb_032920_050--Hb_000613_110 Hb_000479_250 Hb_000479_250 Hb_032920_050--Hb_000479_250 Hb_003994_110 Hb_003994_110 Hb_032920_050--Hb_003994_110 Hb_007101_080 Hb_007101_080 Hb_032920_050--Hb_007101_080 Hb_007922_020 Hb_007922_020 Hb_000261_060--Hb_007922_020 Hb_001369_750 Hb_001369_750 Hb_000261_060--Hb_001369_750 Hb_000261_060--Hb_001008_120 Hb_007317_140 Hb_007317_140 Hb_000261_060--Hb_007317_140 Hb_000025_270 Hb_000025_270 Hb_003020_030--Hb_000025_270 Hb_003020_030--Hb_001008_120 Hb_003020_030--Hb_001936_090 Hb_000033_110 Hb_000033_110 Hb_003020_030--Hb_000033_110 Hb_006483_110 Hb_006483_110 Hb_003020_030--Hb_006483_110 Hb_000648_040 Hb_000648_040 Hb_000130_320--Hb_000648_040 Hb_000130_320--Hb_002758_010 Hb_001790_080 Hb_001790_080 Hb_000130_320--Hb_001790_080 Hb_000749_090 Hb_000749_090 Hb_000130_320--Hb_000749_090 Hb_000130_320--Hb_001936_090 Hb_001435_030--Hb_000261_060 Hb_000027_190 Hb_000027_190 Hb_001435_030--Hb_000027_190 Hb_002055_040 Hb_002055_040 Hb_001435_030--Hb_002055_040 Hb_001435_030--Hb_005253_030 Hb_003467_030 Hb_003467_030 Hb_001435_030--Hb_003467_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.43835 4.80341 7.23189 5.85477 8.16654 10.5384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.89578 7.48403 7.09912 7.95171 19.3629

CAGE analysis