Hb_037000_010

Information

Type -
Description -
Location Contig37000: 12-434
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16610g
description germin-like protein 1
nr
ID XP_012075591.1
description PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
swissprot
ID Q6K5Q0
description Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1
trembl
ID A0A067KFB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09204 PE=4 SV=1
Gene Ontology
ID GO:0030145
description germin-like protein 2-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_037000_010 0.0 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
2 Hb_004957_040 0.0018408267 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
3 Hb_158909_010 0.0029913165 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
4 Hb_003251_020 0.0037124007 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
5 Hb_000107_690 0.0039448191 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000134_140 0.0051695164 - - lipid binding protein, putative [Ricinus communis]
7 Hb_086639_110 0.0081893745 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
8 Hb_000330_010 0.0083423958 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
9 Hb_000130_430 0.0132979963 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
10 Hb_131748_010 0.0134186287 - - hypothetical protein PRUPE_ppa022115mg [Prunus persica]
11 Hb_001136_150 0.0140213444 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001248_160 0.0176463057 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
13 Hb_000340_170 0.0192162496 - - PREDICTED: GDSL esterase/lipase At1g54790-like [Jatropha curcas]
14 Hb_156212_010 0.0193011743 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_000002_020 0.0200576162 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
16 Hb_163180_010 0.0215684677 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_004918_020 0.0217195412 - - -
18 Hb_003018_220 0.0220419891 - - Snakin-2 [Gossypium arboreum]
19 Hb_001926_060 0.0226718022 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
20 Hb_007058_020 0.0236505994 - - -

Gene co-expression network

sample Hb_037000_010 Hb_037000_010 Hb_004957_040 Hb_004957_040 Hb_037000_010--Hb_004957_040 Hb_158909_010 Hb_158909_010 Hb_037000_010--Hb_158909_010 Hb_003251_020 Hb_003251_020 Hb_037000_010--Hb_003251_020 Hb_000107_690 Hb_000107_690 Hb_037000_010--Hb_000107_690 Hb_000134_140 Hb_000134_140 Hb_037000_010--Hb_000134_140 Hb_086639_110 Hb_086639_110 Hb_037000_010--Hb_086639_110 Hb_004957_040--Hb_000134_140 Hb_004957_040--Hb_158909_010 Hb_004957_040--Hb_003251_020 Hb_004957_040--Hb_000107_690 Hb_004957_040--Hb_086639_110 Hb_158909_010--Hb_003251_020 Hb_158909_010--Hb_000107_690 Hb_158909_010--Hb_086639_110 Hb_000330_010 Hb_000330_010 Hb_158909_010--Hb_000330_010 Hb_003251_020--Hb_000107_690 Hb_003251_020--Hb_086639_110 Hb_003251_020--Hb_000330_010 Hb_000107_690--Hb_086639_110 Hb_000107_690--Hb_000330_010 Hb_000134_140--Hb_158909_010 Hb_131748_010 Hb_131748_010 Hb_000134_140--Hb_131748_010 Hb_000134_140--Hb_003251_020 Hb_000134_140--Hb_000107_690 Hb_086639_110--Hb_000330_010 Hb_000130_430 Hb_000130_430 Hb_086639_110--Hb_000130_430 Hb_001136_150 Hb_001136_150 Hb_086639_110--Hb_001136_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0592893 0.252828 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis