Hb_037271_010

Information

Type -
Description -
Location Contig37271: 753-1205
Sequence    

Annotation

kegg
ID tcc:TCM_038803
description Gag protease polyprotein
nr
ID XP_012479950.1
description PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0MXC0
description Chaperone surA OS=Gossypium arboreum GN=F383_30551 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_037271_010 0.0 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
2 Hb_046707_010 0.0731259272 - - PREDICTED: uncharacterized protein LOC104887079 [Beta vulgaris subsp. vulgaris]
3 Hb_110486_010 0.2062961214 - - -
4 Hb_034050_010 0.2791018952 - - PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]
5 Hb_004162_300 0.2792426437 - - monovalent cation:proton antiporter, putative [Ricinus communis]
6 Hb_027014_010 0.2802309721 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
7 Hb_121031_010 0.2804327795 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
8 Hb_163115_010 0.2881877654 - - -
9 Hb_000875_100 0.2949153924 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
10 Hb_183366_010 0.3016651057 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
11 Hb_001809_040 0.3069675179 - - PREDICTED: uncharacterized protein LOC105638660 [Jatropha curcas]
12 Hb_003116_020 0.3139405791 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
13 Hb_000599_060 0.3143165532 - - PREDICTED: legumin A-like [Jatropha curcas]
14 Hb_004532_010 0.3275508143 - - PREDICTED: uncharacterized protein LOC105800934 [Gossypium raimondii]
15 Hb_001014_200 0.3599670208 - - -
16 Hb_001080_110 0.3649333217 - - -
17 Hb_175572_010 0.3679315337 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_012193_020 0.3721114672 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
19 Hb_033044_010 0.3835998013 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5-like isoform X3 [Gossypium raimondii]
20 Hb_033883_050 0.3870301563 - - -

Gene co-expression network

sample Hb_037271_010 Hb_037271_010 Hb_046707_010 Hb_046707_010 Hb_037271_010--Hb_046707_010 Hb_110486_010 Hb_110486_010 Hb_037271_010--Hb_110486_010 Hb_034050_010 Hb_034050_010 Hb_037271_010--Hb_034050_010 Hb_004162_300 Hb_004162_300 Hb_037271_010--Hb_004162_300 Hb_027014_010 Hb_027014_010 Hb_037271_010--Hb_027014_010 Hb_121031_010 Hb_121031_010 Hb_037271_010--Hb_121031_010 Hb_046707_010--Hb_110486_010 Hb_046707_010--Hb_121031_010 Hb_000875_100 Hb_000875_100 Hb_046707_010--Hb_000875_100 Hb_046707_010--Hb_034050_010 Hb_046707_010--Hb_004162_300 Hb_033883_050 Hb_033883_050 Hb_110486_010--Hb_033883_050 Hb_001014_200 Hb_001014_200 Hb_110486_010--Hb_001014_200 Hb_110486_010--Hb_000875_100 Hb_110486_010--Hb_121031_010 Hb_034050_010--Hb_121031_010 Hb_034050_010--Hb_004162_300 Hb_034050_010--Hb_000875_100 Hb_034050_010--Hb_027014_010 Hb_163115_010 Hb_163115_010 Hb_034050_010--Hb_163115_010 Hb_183366_010 Hb_183366_010 Hb_034050_010--Hb_183366_010 Hb_004162_300--Hb_027014_010 Hb_004162_300--Hb_163115_010 Hb_004162_300--Hb_121031_010 Hb_004162_300--Hb_183366_010 Hb_001809_040 Hb_001809_040 Hb_004162_300--Hb_001809_040 Hb_027014_010--Hb_163115_010 Hb_027014_010--Hb_183366_010 Hb_027014_010--Hb_121031_010 Hb_027014_010--Hb_001809_040 Hb_121031_010--Hb_000875_100 Hb_121031_010--Hb_163115_010 Hb_121031_010--Hb_183366_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.148733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.158655 0 0 0.0523652 0

CAGE analysis