Hb_037519_010

Information

Type -
Description -
Location Contig37519: 1279-1758
Sequence    

Annotation

kegg
ID rcu:RCOM_0318480
description hypothetical protein
nr
ID XP_012085860.1
description PREDICTED: auxin-induced in root cultures protein 12-like [Jatropha curcas]
swissprot
ID Q9LSE7
description Cytochrome b561 and DOMON domain-containing protein At3g25290 OS=Arabidopsis thaliana GN=At3g25290 PE=2 SV=1
trembl
ID A0A067K439
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17727 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_037519_010 0.0 - - PREDICTED: auxin-induced in root cultures protein 12-like [Jatropha curcas]
2 Hb_011432_010 0.0670956302 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
3 Hb_011358_010 0.0765049283 - - -
4 Hb_002973_130 0.0885861841 - - PREDICTED: uncharacterized protein LOC104609908 [Nelumbo nucifera]
5 Hb_145080_010 0.0946546525 - - PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
6 Hb_112791_030 0.0964537246 - - Uncharacterized protein TCM_027940 [Theobroma cacao]
7 Hb_002876_280 0.1211800008 - - hypothetical protein RCOM_0686540 [Ricinus communis]
8 Hb_006351_120 0.1361404651 - - hypothetical protein CICLE_v10030803mg [Citrus clementina]
9 Hb_012691_060 0.138738224 - - PREDICTED: isoflavone 2'-hydroxylase-like isoform X1 [Prunus mume]
10 Hb_000856_210 0.1418868445 - - nitrate transporter, putative [Ricinus communis]
11 Hb_000193_090 0.1497924222 - - cysteine protease, putative [Ricinus communis]
12 Hb_125181_010 0.1524070987 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
13 Hb_019925_020 0.1562256104 - - electron carrier, putative [Ricinus communis]
14 Hb_000207_240 0.1679738772 - - hypothetical protein RCOM_0686540 [Ricinus communis]
15 Hb_005018_030 0.1730376776 - - hypothetical protein CICLE_v10019811mg [Citrus clementina]
16 Hb_005183_030 0.1731600555 - - PREDICTED: probable calcium-binding protein CML16 [Jatropha curcas]
17 Hb_016734_040 0.1740133633 - - abhydrolase domain containing, putative [Ricinus communis]
18 Hb_007295_020 0.1747281789 - - Uncharacterized protein TCM_034658 [Theobroma cacao]
19 Hb_002631_110 0.1801537514 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
20 Hb_016564_050 0.1814730061 - - -

Gene co-expression network

sample Hb_037519_010 Hb_037519_010 Hb_011432_010 Hb_011432_010 Hb_037519_010--Hb_011432_010 Hb_011358_010 Hb_011358_010 Hb_037519_010--Hb_011358_010 Hb_002973_130 Hb_002973_130 Hb_037519_010--Hb_002973_130 Hb_145080_010 Hb_145080_010 Hb_037519_010--Hb_145080_010 Hb_112791_030 Hb_112791_030 Hb_037519_010--Hb_112791_030 Hb_002876_280 Hb_002876_280 Hb_037519_010--Hb_002876_280 Hb_011432_010--Hb_002973_130 Hb_011432_010--Hb_011358_010 Hb_011432_010--Hb_145080_010 Hb_011432_010--Hb_112791_030 Hb_011432_010--Hb_002876_280 Hb_011358_010--Hb_112791_030 Hb_011358_010--Hb_145080_010 Hb_011358_010--Hb_002973_130 Hb_000193_090 Hb_000193_090 Hb_011358_010--Hb_000193_090 Hb_002973_130--Hb_145080_010 Hb_002973_130--Hb_112791_030 Hb_002973_130--Hb_002876_280 Hb_145080_010--Hb_112791_030 Hb_007295_020 Hb_007295_020 Hb_145080_010--Hb_007295_020 Hb_112791_030--Hb_007295_020 Hb_003858_060 Hb_003858_060 Hb_002876_280--Hb_003858_060 Hb_000856_210 Hb_000856_210 Hb_002876_280--Hb_000856_210 Hb_002876_280--Hb_145080_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.380174 0 0.484826 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.110205 0.946834

CAGE analysis