Hb_037684_010

Information

Type -
Description -
Location Contig37684: 10605-12483
Sequence    

Annotation

kegg
ID rcu:RCOM_1077550
description TMV resistance protein N, putative
nr
ID XP_012085907.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
swissprot
ID Q9SCX7
description Inactive disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=3 SV=1
trembl
ID B9RM35
description TMV resistance protein N, putative OS=Ricinus communis GN=RCOM_1077550 PE=4 SV=1
Gene Ontology
ID GO:0000166
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_037684_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
2 Hb_000899_060 0.074345479 - - PREDICTED: uncharacterized protein LOC105793631 [Gossypium raimondii]
3 Hb_002374_520 0.1015997276 - - early nodulin 8 precursor family protein [Populus trichocarpa]
4 Hb_020817_030 0.1169367261 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
5 Hb_000245_100 0.1184332516 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
6 Hb_002053_170 0.1235248884 - - cytochrome P450, putative [Ricinus communis]
7 Hb_002598_020 0.1305900429 - - PREDICTED: sugar transporter ERD6-like 5 [Populus euphratica]
8 Hb_007802_010 0.1454647283 - - Receptor like protein 6, putative [Theobroma cacao]
9 Hb_030949_010 0.1514085553 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
10 Hb_004785_170 0.1520008948 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
11 Hb_000090_020 0.1550699623 - - acyltransferase, putative [Ricinus communis]
12 Hb_002477_080 0.1554235574 - - hypothetical protein RCOM_0653450 [Ricinus communis]
13 Hb_008948_010 0.1558117611 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
14 Hb_000956_100 0.1591455941 - - Cucumisin precursor, putative [Ricinus communis]
15 Hb_027892_050 0.1591508 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
16 Hb_001318_230 0.1605201185 - - Boron transporter, putative [Ricinus communis]
17 Hb_001907_050 0.161878583 - - Receptor like protein 6, putative [Theobroma cacao]
18 Hb_004307_070 0.1656559823 - - kinase, putative [Ricinus communis]
19 Hb_005391_050 0.1669134043 - - PREDICTED: uncharacterized protein LOC105643654 [Jatropha curcas]
20 Hb_001221_470 0.1689357329 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]

Gene co-expression network

sample Hb_037684_010 Hb_037684_010 Hb_000899_060 Hb_000899_060 Hb_037684_010--Hb_000899_060 Hb_002374_520 Hb_002374_520 Hb_037684_010--Hb_002374_520 Hb_020817_030 Hb_020817_030 Hb_037684_010--Hb_020817_030 Hb_000245_100 Hb_000245_100 Hb_037684_010--Hb_000245_100 Hb_002053_170 Hb_002053_170 Hb_037684_010--Hb_002053_170 Hb_002598_020 Hb_002598_020 Hb_037684_010--Hb_002598_020 Hb_002477_080 Hb_002477_080 Hb_000899_060--Hb_002477_080 Hb_000899_060--Hb_002374_520 Hb_000899_060--Hb_002598_020 Hb_000090_020 Hb_000090_020 Hb_000899_060--Hb_000090_020 Hb_103541_010 Hb_103541_010 Hb_000899_060--Hb_103541_010 Hb_002374_520--Hb_002598_020 Hb_032260_130 Hb_032260_130 Hb_002374_520--Hb_032260_130 Hb_007237_080 Hb_007237_080 Hb_002374_520--Hb_007237_080 Hb_000453_290 Hb_000453_290 Hb_002374_520--Hb_000453_290 Hb_020817_030--Hb_000899_060 Hb_020817_030--Hb_002053_170 Hb_007802_010 Hb_007802_010 Hb_020817_030--Hb_007802_010 Hb_001907_050 Hb_001907_050 Hb_020817_030--Hb_001907_050 Hb_011470_010 Hb_011470_010 Hb_020817_030--Hb_011470_010 Hb_005329_030 Hb_005329_030 Hb_000245_100--Hb_005329_030 Hb_003858_060 Hb_003858_060 Hb_000245_100--Hb_003858_060 Hb_006355_070 Hb_006355_070 Hb_000245_100--Hb_006355_070 Hb_004204_220 Hb_004204_220 Hb_000245_100--Hb_004204_220 Hb_009222_080 Hb_009222_080 Hb_000245_100--Hb_009222_080 Hb_002213_050 Hb_002213_050 Hb_002053_170--Hb_002213_050 Hb_002808_010 Hb_002808_010 Hb_002053_170--Hb_002808_010 Hb_001131_050 Hb_001131_050 Hb_002053_170--Hb_001131_050 Hb_016564_050 Hb_016564_050 Hb_002053_170--Hb_016564_050 Hb_000537_090 Hb_000537_090 Hb_002598_020--Hb_000537_090 Hb_026144_040 Hb_026144_040 Hb_002598_020--Hb_026144_040 Hb_000162_070 Hb_000162_070 Hb_002598_020--Hb_000162_070 Hb_002598_020--Hb_000090_020 Hb_008598_010 Hb_008598_010 Hb_002598_020--Hb_008598_010 Hb_001318_230 Hb_001318_230 Hb_002598_020--Hb_001318_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.225174 0.0154805 0.404198 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.127295 0.217793

CAGE analysis