Hb_037790_010

Information

Type -
Description -
Location Contig37790: 18-563
Sequence    

Annotation

kegg
ID tcc:TCM_038803
description Gag protease polyprotein
nr
ID XP_012479950.1
description PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVE7
description Uncharacterized protein OS=Gossypium arboreum GN=F383_16817 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_037790_010 0.0 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
2 Hb_000018_050 0.2174980537 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
3 Hb_002860_020 0.2393550717 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_000101_280 0.2429266325 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
5 Hb_163663_010 0.2843788013 - - PREDICTED: uncharacterized protein LOC105629934 [Jatropha curcas]
6 Hb_087426_010 0.3003352325 - - PREDICTED: uncharacterized protein LOC105803348 [Gossypium raimondii]
7 Hb_000709_020 0.3045760771 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_002870_050 0.3143494449 - - -
9 Hb_002652_010 0.3356946355 - - -
10 Hb_001160_010 0.3447212616 - - -
11 Hb_000347_050 0.3550386906 - - PREDICTED: ABC transporter B family member 3-like [Jatropha curcas]
12 Hb_056550_010 0.3574908557 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
13 Hb_006212_030 0.3593232902 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
14 Hb_002374_130 0.359978787 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
15 Hb_000351_150 0.3660171794 - - Wall-associated kinase 2, putative [Theobroma cacao]
16 Hb_164370_010 0.3683088584 - - -
17 Hb_004018_010 0.3692174916 - - PREDICTED: uncharacterized protein LOC105784835 [Gossypium raimondii]
18 Hb_005356_060 0.3781467808 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
19 Hb_155720_010 0.3793160784 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
20 Hb_067730_010 0.3834806609 - - hypothetical protein OsJ_21419 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_037790_010 Hb_037790_010 Hb_000018_050 Hb_000018_050 Hb_037790_010--Hb_000018_050 Hb_002860_020 Hb_002860_020 Hb_037790_010--Hb_002860_020 Hb_000101_280 Hb_000101_280 Hb_037790_010--Hb_000101_280 Hb_163663_010 Hb_163663_010 Hb_037790_010--Hb_163663_010 Hb_087426_010 Hb_087426_010 Hb_037790_010--Hb_087426_010 Hb_000709_020 Hb_000709_020 Hb_037790_010--Hb_000709_020 Hb_007904_010 Hb_007904_010 Hb_000018_050--Hb_007904_010 Hb_005822_030 Hb_005822_030 Hb_000018_050--Hb_005822_030 Hb_006212_030 Hb_006212_030 Hb_000018_050--Hb_006212_030 Hb_002374_130 Hb_002374_130 Hb_000018_050--Hb_002374_130 Hb_019617_010 Hb_019617_010 Hb_000018_050--Hb_019617_010 Hb_134711_010 Hb_134711_010 Hb_002860_020--Hb_134711_010 Hb_002860_020--Hb_000018_050 Hb_010589_140 Hb_010589_140 Hb_002860_020--Hb_010589_140 Hb_155720_010 Hb_155720_010 Hb_002860_020--Hb_155720_010 Hb_164370_010 Hb_164370_010 Hb_002860_020--Hb_164370_010 Hb_000101_280--Hb_163663_010 Hb_000101_280--Hb_000709_020 Hb_000101_280--Hb_087426_010 Hb_001160_010 Hb_001160_010 Hb_000101_280--Hb_001160_010 Hb_041476_010 Hb_041476_010 Hb_000101_280--Hb_041476_010 Hb_163663_010--Hb_000709_020 Hb_163663_010--Hb_087426_010 Hb_004018_010 Hb_004018_010 Hb_163663_010--Hb_004018_010 Hb_056550_010 Hb_056550_010 Hb_163663_010--Hb_056550_010 Hb_000351_150 Hb_000351_150 Hb_163663_010--Hb_000351_150 Hb_087426_010--Hb_056550_010 Hb_087426_010--Hb_000351_150 Hb_087426_010--Hb_000709_020 Hb_087426_010--Hb_004018_010 Hb_000709_020--Hb_004018_010 Hb_000709_020--Hb_056550_010 Hb_000709_020--Hb_000351_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.127456 0 0 0 0 0.247442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0916014 0 0 0.34875

CAGE analysis