Hb_037887_010

Information

Type -
Description -
Location Contig37887: 285-729
Sequence    

Annotation

kegg
ID rcu:RCOM_0653440
description Charged multivesicular body protein 2a, putative
nr
ID XP_002521345.1
description Charged multivesicular body protein 2a, putative [Ricinus communis]
swissprot
ID Q9SKI2
description Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
trembl
ID B9S5S6
description Charged multivesicular body protein 2a, putative OS=Ricinus communis GN=RCOM_0653440 PE=4 SV=1
Gene Ontology
ID GO:0000815
description snf7-like partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_037887_010 0.0 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
2 Hb_000083_170 0.0554095009 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
3 Hb_003092_030 0.0729246075 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
4 Hb_000898_050 0.076672895 - - -
5 Hb_006198_080 0.0827338622 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
6 Hb_006429_010 0.0831364294 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
7 Hb_001584_190 0.0892145441 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
8 Hb_000162_260 0.0899821 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1 [Nelumbo nucifera]
9 Hb_000479_190 0.09054921 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000107_310 0.0908834307 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
11 Hb_012653_040 0.09213906 - - UV-induced protein uvi31, putative [Ricinus communis]
12 Hb_021238_050 0.0924041716 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003352_040 0.0925054565 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
14 Hb_002259_160 0.0926745942 - - hypothetical protein PSEUBRA_SCAF14g01508 [Pseudozyma brasiliensis GHG001]
15 Hb_001205_150 0.0945473525 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
16 Hb_001504_080 0.0948948121 - - golgi snare 11 protein, putative [Ricinus communis]
17 Hb_180301_010 0.0972732497 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
18 Hb_001268_050 0.0992746164 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
19 Hb_012675_070 0.101112677 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
20 Hb_005867_020 0.1011765512 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]

Gene co-expression network

sample Hb_037887_010 Hb_037887_010 Hb_000083_170 Hb_000083_170 Hb_037887_010--Hb_000083_170 Hb_003092_030 Hb_003092_030 Hb_037887_010--Hb_003092_030 Hb_000898_050 Hb_000898_050 Hb_037887_010--Hb_000898_050 Hb_006198_080 Hb_006198_080 Hb_037887_010--Hb_006198_080 Hb_006429_010 Hb_006429_010 Hb_037887_010--Hb_006429_010 Hb_001584_190 Hb_001584_190 Hb_037887_010--Hb_001584_190 Hb_005867_020 Hb_005867_020 Hb_000083_170--Hb_005867_020 Hb_000162_260 Hb_000162_260 Hb_000083_170--Hb_000162_260 Hb_000326_090 Hb_000326_090 Hb_000083_170--Hb_000326_090 Hb_012653_040 Hb_012653_040 Hb_000083_170--Hb_012653_040 Hb_002259_160 Hb_002259_160 Hb_000083_170--Hb_002259_160 Hb_003092_030--Hb_006198_080 Hb_000700_110 Hb_000700_110 Hb_003092_030--Hb_000700_110 Hb_021238_050 Hb_021238_050 Hb_003092_030--Hb_021238_050 Hb_003092_030--Hb_000898_050 Hb_003092_030--Hb_006429_010 Hb_001114_130 Hb_001114_130 Hb_000898_050--Hb_001114_130 Hb_000856_260 Hb_000856_260 Hb_000898_050--Hb_000856_260 Hb_000898_050--Hb_006198_080 Hb_000898_050--Hb_006429_010 Hb_006198_080--Hb_000700_110 Hb_000347_200 Hb_000347_200 Hb_006198_080--Hb_000347_200 Hb_000107_310 Hb_000107_310 Hb_006198_080--Hb_000107_310 Hb_006198_080--Hb_021238_050 Hb_000479_190 Hb_000479_190 Hb_006429_010--Hb_000479_190 Hb_001205_150 Hb_001205_150 Hb_006429_010--Hb_001205_150 Hb_004218_110 Hb_004218_110 Hb_006429_010--Hb_004218_110 Hb_002759_060 Hb_002759_060 Hb_006429_010--Hb_002759_060 Hb_001584_190--Hb_000479_190 Hb_012799_160 Hb_012799_160 Hb_001584_190--Hb_012799_160 Hb_000331_450 Hb_000331_450 Hb_001584_190--Hb_000331_450 Hb_001584_190--Hb_002759_060 Hb_010042_010 Hb_010042_010 Hb_001584_190--Hb_010042_010 Hb_006846_060 Hb_006846_060 Hb_001584_190--Hb_006846_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.8685 25.8504 37.3012 123.225 61.5403 194.962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
115.466 150.788 164.163 71.047 50.9858

CAGE analysis