Hb_037960_010

Information

Type -
Description -
Location Contig37960: 4747-12446
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID O65530
description Proline-rich receptor-like protein kinase PERK14 OS=Arabidopsis thaliana GN=PERK14 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_037960_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_001410_100 0.1147833239 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
3 Hb_011382_030 0.1898518385 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
4 Hb_043903_010 0.2043061359 - - PREDICTED: protein kinase 2B, chloroplastic-like [Tarenaya hassleriana]
5 Hb_000375_040 0.2102022546 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 308-like [Populus euphratica]
6 Hb_003446_030 0.2142724248 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
7 Hb_145535_010 0.2158252605 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
8 Hb_004894_010 0.2177749804 - - -
9 Hb_010253_010 0.2180518518 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Amborella trichopoda]
10 Hb_000243_110 0.2255410942 - - PREDICTED: WAT1-related protein At3g53210-like [Jatropha curcas]
11 Hb_089610_010 0.229762966 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
12 Hb_008953_010 0.232744822 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X2 [Solanum lycopersicum]
13 Hb_000412_030 0.2441413206 - - glycosyl hydrolase family 35 family protein [Populus trichocarpa]
14 Hb_005539_160 0.2441438283 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
15 Hb_122025_010 0.2449115023 - - hypothetical protein POPTR_0003s052201g, partial [Populus trichocarpa]
16 Hb_002758_040 0.2455927836 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002595_020 0.2459923524 - - PREDICTED: class I heat shock protein, partial [Nicotiana sylvestris]
18 Hb_000445_020 0.2511635092 - - GABA-specific permease, putative [Ricinus communis]
19 Hb_005747_020 0.2513772252 - - bacterial-induced peroxidase [Gossypium schwendimanii]
20 Hb_000419_080 0.2515724887 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]

Gene co-expression network

sample Hb_037960_010 Hb_037960_010 Hb_001410_100 Hb_001410_100 Hb_037960_010--Hb_001410_100 Hb_011382_030 Hb_011382_030 Hb_037960_010--Hb_011382_030 Hb_043903_010 Hb_043903_010 Hb_037960_010--Hb_043903_010 Hb_000375_040 Hb_000375_040 Hb_037960_010--Hb_000375_040 Hb_003446_030 Hb_003446_030 Hb_037960_010--Hb_003446_030 Hb_145535_010 Hb_145535_010 Hb_037960_010--Hb_145535_010 Hb_002595_020 Hb_002595_020 Hb_001410_100--Hb_002595_020 Hb_031862_280 Hb_031862_280 Hb_001410_100--Hb_031862_280 Hb_089610_010 Hb_089610_010 Hb_001410_100--Hb_089610_010 Hb_004894_010 Hb_004894_010 Hb_001410_100--Hb_004894_010 Hb_000243_110 Hb_000243_110 Hb_001410_100--Hb_000243_110 Hb_002758_040 Hb_002758_040 Hb_011382_030--Hb_002758_040 Hb_011382_030--Hb_145535_010 Hb_011382_030--Hb_003446_030 Hb_027402_120 Hb_027402_120 Hb_011382_030--Hb_027402_120 Hb_000141_210 Hb_000141_210 Hb_011382_030--Hb_000141_210 Hb_000160_230 Hb_000160_230 Hb_011382_030--Hb_000160_230 Hb_043903_010--Hb_000375_040 Hb_008953_010 Hb_008953_010 Hb_043903_010--Hb_008953_010 Hb_000828_030 Hb_000828_030 Hb_043903_010--Hb_000828_030 Hb_004981_020 Hb_004981_020 Hb_043903_010--Hb_004981_020 Hb_143766_040 Hb_143766_040 Hb_043903_010--Hb_143766_040 Hb_007337_010 Hb_007337_010 Hb_043903_010--Hb_007337_010 Hb_000375_040--Hb_008953_010 Hb_000375_040--Hb_000828_030 Hb_081224_010 Hb_081224_010 Hb_000375_040--Hb_081224_010 Hb_187247_010 Hb_187247_010 Hb_000375_040--Hb_187247_010 Hb_061590_010 Hb_061590_010 Hb_000375_040--Hb_061590_010 Hb_001032_060 Hb_001032_060 Hb_003446_030--Hb_001032_060 Hb_028013_010 Hb_028013_010 Hb_003446_030--Hb_028013_010 Hb_003446_030--Hb_145535_010 Hb_018709_010 Hb_018709_010 Hb_003446_030--Hb_018709_010 Hb_000419_080 Hb_000419_080 Hb_003446_030--Hb_000419_080 Hb_000445_020 Hb_000445_020 Hb_003446_030--Hb_000445_020 Hb_145535_010--Hb_000419_080 Hb_000488_040 Hb_000488_040 Hb_145535_010--Hb_000488_040 Hb_000859_040 Hb_000859_040 Hb_145535_010--Hb_000859_040 Hb_007810_140 Hb_007810_140 Hb_145535_010--Hb_007810_140 Hb_001410_090 Hb_001410_090 Hb_145535_010--Hb_001410_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0313998 1.028 0.0109914 0.020612 0.105777 1.30113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.58608 0

CAGE analysis