Hb_037960_020

Information

Type -
Description -
Location Contig37960: 13131-13549
Sequence    

Annotation

kegg
ID cic:CICLE_v10026841mg
description hypothetical protein
nr
ID XP_006426971.1
description hypothetical protein CICLE_v10026841mg [Citrus clementina]
swissprot
ID P49212
description 60S ribosomal protein L37 (Fragment) OS=Solanum lycopersicum GN=RPL37 PE=2 SV=1
trembl
ID A0A067F063
description Ribosomal protein L37 OS=Citrus sinensis GN=CISIN_1g034400mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l37-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_037960_020 0.0 - - hypothetical protein CICLE_v10026841mg [Citrus clementina]
2 Hb_000840_270 0.1596514869 - - PREDICTED: small RNA degrading nuclease 1 [Jatropha curcas]
3 Hb_002235_150 0.161576606 - - -
4 Hb_188964_010 0.1810179971 - - maintenance of killer 16 (mak16) protein, putative [Ricinus communis]
5 Hb_001623_580 0.1838085824 - - PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
6 Hb_009851_110 0.1853512519 - - structural constituent of ribosome, putative [Ricinus communis]
7 Hb_003086_070 0.1855934876 - - PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Jatropha curcas]
8 Hb_004032_050 0.1882774189 - - hypothetical protein CISIN_1g014592mg [Citrus sinensis]
9 Hb_004852_030 0.1888161508 - - PREDICTED: uncharacterized protein LOC105639923 [Jatropha curcas]
10 Hb_089032_020 0.1893072992 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
11 Hb_002408_010 0.1911558297 - - cation-transporting atpase plant, putative [Ricinus communis]
12 Hb_006816_150 0.1913004977 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
13 Hb_033642_020 0.1944332588 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
14 Hb_003106_130 0.1968963462 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
15 Hb_005928_060 0.1977513692 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
16 Hb_000384_090 0.198887033 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
17 Hb_003120_060 0.1993421399 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
18 Hb_028900_020 0.2008838481 - - unnamed protein product [Coffea canephora]
19 Hb_000997_020 0.2013568723 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
20 Hb_079738_010 0.2040428375 - - hypothetical protein CISIN_1g036582mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_037960_020 Hb_037960_020 Hb_000840_270 Hb_000840_270 Hb_037960_020--Hb_000840_270 Hb_002235_150 Hb_002235_150 Hb_037960_020--Hb_002235_150 Hb_188964_010 Hb_188964_010 Hb_037960_020--Hb_188964_010 Hb_001623_580 Hb_001623_580 Hb_037960_020--Hb_001623_580 Hb_009851_110 Hb_009851_110 Hb_037960_020--Hb_009851_110 Hb_003086_070 Hb_003086_070 Hb_037960_020--Hb_003086_070 Hb_003106_130 Hb_003106_130 Hb_000840_270--Hb_003106_130 Hb_000157_030 Hb_000157_030 Hb_000840_270--Hb_000157_030 Hb_000025_760 Hb_000025_760 Hb_000840_270--Hb_000025_760 Hb_000840_270--Hb_002235_150 Hb_002408_010 Hb_002408_010 Hb_000840_270--Hb_002408_010 Hb_008578_010 Hb_008578_010 Hb_000840_270--Hb_008578_010 Hb_002235_150--Hb_003106_130 Hb_003746_040 Hb_003746_040 Hb_002235_150--Hb_003746_040 Hb_002235_150--Hb_002408_010 Hb_003120_060 Hb_003120_060 Hb_002235_150--Hb_003120_060 Hb_000622_100 Hb_000622_100 Hb_002235_150--Hb_000622_100 Hb_043302_010 Hb_043302_010 Hb_002235_150--Hb_043302_010 Hb_005228_080 Hb_005228_080 Hb_188964_010--Hb_005228_080 Hb_003581_020 Hb_003581_020 Hb_188964_010--Hb_003581_020 Hb_000906_060 Hb_000906_060 Hb_188964_010--Hb_000906_060 Hb_004567_100 Hb_004567_100 Hb_188964_010--Hb_004567_100 Hb_001582_030 Hb_001582_030 Hb_188964_010--Hb_001582_030 Hb_000613_100 Hb_000613_100 Hb_188964_010--Hb_000613_100 Hb_003605_070 Hb_003605_070 Hb_001623_580--Hb_003605_070 Hb_004032_050 Hb_004032_050 Hb_001623_580--Hb_004032_050 Hb_002276_190 Hb_002276_190 Hb_001623_580--Hb_002276_190 Hb_005288_160 Hb_005288_160 Hb_001623_580--Hb_005288_160 Hb_000209_090 Hb_000209_090 Hb_001623_580--Hb_000209_090 Hb_000284_200 Hb_000284_200 Hb_001623_580--Hb_000284_200 Hb_004899_030 Hb_004899_030 Hb_009851_110--Hb_004899_030 Hb_004656_060 Hb_004656_060 Hb_009851_110--Hb_004656_060 Hb_005895_040 Hb_005895_040 Hb_009851_110--Hb_005895_040 Hb_000422_140 Hb_000422_140 Hb_009851_110--Hb_000422_140 Hb_004701_030 Hb_004701_030 Hb_009851_110--Hb_004701_030 Hb_003091_010 Hb_003091_010 Hb_009851_110--Hb_003091_010 Hb_003126_040 Hb_003126_040 Hb_003086_070--Hb_003126_040 Hb_002154_120 Hb_002154_120 Hb_003086_070--Hb_002154_120 Hb_000290_020 Hb_000290_020 Hb_003086_070--Hb_000290_020 Hb_001348_070 Hb_001348_070 Hb_003086_070--Hb_001348_070 Hb_000690_130 Hb_000690_130 Hb_003086_070--Hb_000690_130 Hb_005928_060 Hb_005928_060 Hb_003086_070--Hb_005928_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.73179 3.09935 5.93752 3.13229 28.7964 29.8946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.3426 16.8081 6.34821 2.83561 3.6946

CAGE analysis