Hb_038172_010

Information

Type desease resistance
Description Gene Name: AAA
Location Contig38172: 1983-2551
Sequence    

Annotation

kegg
ID rcu:RCOM_0118970
description Transitional endoplasmic reticulum ATPase, putative (EC:3.6.4.3)
nr
ID XP_012066248.1
description PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
swissprot
ID Q9ZPR1
description Cell division control protein 48 homolog B OS=Arabidopsis thaliana GN=CDC48B PE=2 SV=1
trembl
ID A0A067L6L8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23815 PE=3 SV=1
Gene Ontology
ID GO:0005524
description cell division control protein 48 homolog b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038172_010 0.0 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
2 Hb_001481_090 0.0690786097 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
3 Hb_003780_030 0.069106953 - - PREDICTED: protein CMSS1 [Jatropha curcas]
4 Hb_002585_040 0.0830063338 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
5 Hb_027472_040 0.087565834 - - SKP1 [Hevea brasiliensis]
6 Hb_014109_040 0.0879374225 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
7 Hb_000342_100 0.0914742163 - - PREDICTED: PITH domain-containing protein 1 [Jatropha curcas]
8 Hb_007576_080 0.0919198064 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
9 Hb_001504_020 0.0943834737 - - 40S ribosomal protein S12A [Hevea brasiliensis]
10 Hb_002253_100 0.0952404516 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
11 Hb_000610_050 0.0966574637 - - skp1, putative [Ricinus communis]
12 Hb_020581_010 0.097940997 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001766_110 0.0984978899 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
14 Hb_003126_080 0.1002393709 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
15 Hb_001828_060 0.1010564471 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
16 Hb_000680_160 0.1026800261 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
17 Hb_003952_090 0.1036218181 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
18 Hb_000272_020 0.1052251332 - - oxidoreductase, putative [Ricinus communis]
19 Hb_002112_020 0.105920924 - - 60S ribosomal protein L9, putative [Ricinus communis]
20 Hb_004837_240 0.1073049082 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_038172_010 Hb_038172_010 Hb_001481_090 Hb_001481_090 Hb_038172_010--Hb_001481_090 Hb_003780_030 Hb_003780_030 Hb_038172_010--Hb_003780_030 Hb_002585_040 Hb_002585_040 Hb_038172_010--Hb_002585_040 Hb_027472_040 Hb_027472_040 Hb_038172_010--Hb_027472_040 Hb_014109_040 Hb_014109_040 Hb_038172_010--Hb_014109_040 Hb_000342_100 Hb_000342_100 Hb_038172_010--Hb_000342_100 Hb_001766_110 Hb_001766_110 Hb_001481_090--Hb_001766_110 Hb_000041_270 Hb_000041_270 Hb_001481_090--Hb_000041_270 Hb_003952_090 Hb_003952_090 Hb_001481_090--Hb_003952_090 Hb_003126_080 Hb_003126_080 Hb_001481_090--Hb_003126_080 Hb_000656_400 Hb_000656_400 Hb_001481_090--Hb_000656_400 Hb_007576_080 Hb_007576_080 Hb_003780_030--Hb_007576_080 Hb_003525_010 Hb_003525_010 Hb_003780_030--Hb_003525_010 Hb_000317_240 Hb_000317_240 Hb_003780_030--Hb_000317_240 Hb_003780_030--Hb_001481_090 Hb_003780_030--Hb_014109_040 Hb_002585_040--Hb_007576_080 Hb_000563_230 Hb_000563_230 Hb_002585_040--Hb_000563_230 Hb_000487_210 Hb_000487_210 Hb_002585_040--Hb_000487_210 Hb_112798_020 Hb_112798_020 Hb_002585_040--Hb_112798_020 Hb_002296_050 Hb_002296_050 Hb_002585_040--Hb_002296_050 Hb_004032_430 Hb_004032_430 Hb_002585_040--Hb_004032_430 Hb_000610_050 Hb_000610_050 Hb_027472_040--Hb_000610_050 Hb_003125_200 Hb_003125_200 Hb_027472_040--Hb_003125_200 Hb_001504_020 Hb_001504_020 Hb_027472_040--Hb_001504_020 Hb_029388_020 Hb_029388_020 Hb_027472_040--Hb_029388_020 Hb_000457_100 Hb_000457_100 Hb_027472_040--Hb_000457_100 Hb_027472_040--Hb_007576_080 Hb_000589_120 Hb_000589_120 Hb_014109_040--Hb_000589_120 Hb_003125_120 Hb_003125_120 Hb_014109_040--Hb_003125_120 Hb_014109_040--Hb_007576_080 Hb_014109_040--Hb_000563_230 Hb_003935_020 Hb_003935_020 Hb_014109_040--Hb_003935_020 Hb_000334_280 Hb_000334_280 Hb_014109_040--Hb_000334_280 Hb_001140_370 Hb_001140_370 Hb_000342_100--Hb_001140_370 Hb_002893_050 Hb_002893_050 Hb_000342_100--Hb_002893_050 Hb_062226_140 Hb_062226_140 Hb_000342_100--Hb_062226_140 Hb_000342_100--Hb_000610_050 Hb_000003_080 Hb_000003_080 Hb_000342_100--Hb_000003_080 Hb_024071_020 Hb_024071_020 Hb_000342_100--Hb_024071_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.4394 7.97596 4.86154 5.84242 10.8325 10.1255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1642 19.7313 4.4538 10.6279 5.12994

CAGE analysis