Hb_038190_040

Information

Type -
Description -
Location Contig38190: 54754-55590
Sequence    

Annotation

kegg
ID pda:103696607
description uncharacterized LOC103696607
nr
ID XP_012073479.1
description PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5CUI2
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038190_040 0.0 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
2 Hb_000740_030 0.1931621272 - - hypothetical protein VITISV_038271 [Vitis vinifera]
3 Hb_003392_010 0.1952673049 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
4 Hb_007943_010 0.1955886519 - - -
5 Hb_049827_010 0.1959208041 - - PREDICTED: uncharacterized protein LOC105762110 [Gossypium raimondii]
6 Hb_000046_230 0.1965162041 - - PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
7 Hb_006387_010 0.1967443329 - - PREDICTED: uncharacterized protein LOC105649124 [Jatropha curcas]
8 Hb_001863_210 0.1989295038 - - -
9 Hb_185830_100 0.1993496458 - - -
10 Hb_002708_010 0.1998269845 - - -
11 Hb_102355_010 0.2068004602 - - PREDICTED: uncharacterized protein LOC104094591, partial [Nicotiana tomentosiformis]
12 Hb_086484_010 0.2084065696 - - PREDICTED: uncharacterized protein LOC101259761 [Solanum lycopersicum]
13 Hb_003637_030 0.2172483859 - - -
14 Hb_003793_050 0.24067963 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
15 Hb_125948_020 0.246196461 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
16 Hb_004604_020 0.2546973132 - - PREDICTED: uncharacterized protein LOC102581016 [Solanum tuberosum]
17 Hb_023528_010 0.2605010585 - - hypothetical protein POPTR_0013s01580g [Populus trichocarpa]
18 Hb_012264_040 0.2681312091 - - -
19 Hb_135941_010 0.2762420935 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
20 Hb_133862_010 0.2786021773 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]

Gene co-expression network

sample Hb_038190_040 Hb_038190_040 Hb_000740_030 Hb_000740_030 Hb_038190_040--Hb_000740_030 Hb_003392_010 Hb_003392_010 Hb_038190_040--Hb_003392_010 Hb_007943_010 Hb_007943_010 Hb_038190_040--Hb_007943_010 Hb_049827_010 Hb_049827_010 Hb_038190_040--Hb_049827_010 Hb_000046_230 Hb_000046_230 Hb_038190_040--Hb_000046_230 Hb_006387_010 Hb_006387_010 Hb_038190_040--Hb_006387_010 Hb_000740_030--Hb_000046_230 Hb_004604_020 Hb_004604_020 Hb_000740_030--Hb_004604_020 Hb_011468_010 Hb_011468_010 Hb_000740_030--Hb_011468_010 Hb_047923_020 Hb_047923_020 Hb_000740_030--Hb_047923_020 Hb_002588_020 Hb_002588_020 Hb_000740_030--Hb_002588_020 Hb_003392_010--Hb_049827_010 Hb_003392_010--Hb_006387_010 Hb_001863_210 Hb_001863_210 Hb_003392_010--Hb_001863_210 Hb_185830_100 Hb_185830_100 Hb_003392_010--Hb_185830_100 Hb_002708_010 Hb_002708_010 Hb_003392_010--Hb_002708_010 Hb_102355_010 Hb_102355_010 Hb_003392_010--Hb_102355_010 Hb_007943_010--Hb_003392_010 Hb_007943_010--Hb_049827_010 Hb_007943_010--Hb_006387_010 Hb_007943_010--Hb_001863_210 Hb_007943_010--Hb_185830_100 Hb_007943_010--Hb_002708_010 Hb_049827_010--Hb_006387_010 Hb_049827_010--Hb_001863_210 Hb_049827_010--Hb_185830_100 Hb_049827_010--Hb_002708_010 Hb_049827_010--Hb_102355_010 Hb_000046_230--Hb_004604_020 Hb_003581_160 Hb_003581_160 Hb_000046_230--Hb_003581_160 Hb_000046_230--Hb_002588_020 Hb_000046_230--Hb_011468_010 Hb_006387_010--Hb_001863_210 Hb_006387_010--Hb_185830_100 Hb_006387_010--Hb_002708_010 Hb_006387_010--Hb_102355_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.106839 0 0 0.157498 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0202072 0

CAGE analysis