Hb_038508_010

Information

Type -
Description -
Location Contig38508: 1487-4032
Sequence    

Annotation

kegg
ID sly:104646016
description uncharacterized LOC104646016
nr
ID XP_012077902.1
description PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W1PUL3
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s01849p00006620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038508_010 0.0 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
2 Hb_000155_240 0.0396150436 - - PREDICTED: uncharacterized protein LOC104888642 [Beta vulgaris subsp. vulgaris]
3 Hb_000789_140 0.0832160174 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
4 Hb_009152_030 0.2034343041 - - hypothetical protein L484_026849 [Morus notabilis]
5 Hb_012235_010 0.211280635 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
6 Hb_016354_010 0.2140656934 - - -
7 Hb_079902_030 0.2183833545 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002042_240 0.2278611896 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_075722_010 0.2363969192 - - hypothetical protein JCGZ_01984 [Jatropha curcas]
10 Hb_002850_030 0.2388543658 - - -
11 Hb_031866_030 0.2449410507 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo]
12 Hb_002060_040 0.25059302 - - putative polyprotein [Oryza sativa Japonica Group]
13 Hb_033066_030 0.2509296827 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
14 Hb_000009_010 0.2891325094 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
15 Hb_001629_040 0.2940387316 - - hypothetical protein POPTR_0001s41630g [Populus trichocarpa]
16 Hb_012807_090 0.306860725 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
17 Hb_008408_050 0.3083064574 - - -
18 Hb_003417_070 0.3087057257 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
19 Hb_153636_010 0.3108938506 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
20 Hb_004951_050 0.3122791215 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_038508_010 Hb_038508_010 Hb_000155_240 Hb_000155_240 Hb_038508_010--Hb_000155_240 Hb_000789_140 Hb_000789_140 Hb_038508_010--Hb_000789_140 Hb_009152_030 Hb_009152_030 Hb_038508_010--Hb_009152_030 Hb_012235_010 Hb_012235_010 Hb_038508_010--Hb_012235_010 Hb_016354_010 Hb_016354_010 Hb_038508_010--Hb_016354_010 Hb_079902_030 Hb_079902_030 Hb_038508_010--Hb_079902_030 Hb_000155_240--Hb_000789_140 Hb_000155_240--Hb_009152_030 Hb_031866_030 Hb_031866_030 Hb_000155_240--Hb_031866_030 Hb_002060_040 Hb_002060_040 Hb_000155_240--Hb_002060_040 Hb_033066_030 Hb_033066_030 Hb_000155_240--Hb_033066_030 Hb_000789_140--Hb_009152_030 Hb_000789_140--Hb_031866_030 Hb_000789_140--Hb_002060_040 Hb_000789_140--Hb_033066_030 Hb_009152_030--Hb_031866_030 Hb_009152_030--Hb_002060_040 Hb_009152_030--Hb_033066_030 Hb_000009_010 Hb_000009_010 Hb_009152_030--Hb_000009_010 Hb_001629_040 Hb_001629_040 Hb_009152_030--Hb_001629_040 Hb_012235_010--Hb_016354_010 Hb_012235_010--Hb_079902_030 Hb_002042_240 Hb_002042_240 Hb_012235_010--Hb_002042_240 Hb_002850_030 Hb_002850_030 Hb_012235_010--Hb_002850_030 Hb_012807_090 Hb_012807_090 Hb_012235_010--Hb_012807_090 Hb_016354_010--Hb_079902_030 Hb_016354_010--Hb_002042_240 Hb_016354_010--Hb_002850_030 Hb_016354_010--Hb_012807_090 Hb_004951_050 Hb_004951_050 Hb_016354_010--Hb_004951_050 Hb_079902_030--Hb_002042_240 Hb_079902_030--Hb_002850_030 Hb_079902_030--Hb_012807_090 Hb_079902_030--Hb_004951_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.032941 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00629387 0.0335609

CAGE analysis