Hb_038574_010

Information

Type -
Description -
Location Contig38574: 22837-42801
Sequence    

Annotation

kegg
ID vvi:100253555
description vacuolar cation/proton exchanger 2
nr
ID XP_011046501.1
description PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]
swissprot
ID Q5KQN0
description Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2
trembl
ID F6HBZ5
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01840 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar cation proton exchanger 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38811: 22555-42691 , PASA_asmbl_38812: 42052-42230 , PASA_asmbl_38813: 41797-41969 , PASA_asmbl_38814: 39564-39677 , PASA_asmbl_38815: 38745-39051
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038574_010 0.0 - - PREDICTED: vacuolar cation/proton exchanger 3-like isoform X2 [Populus euphratica]
2 Hb_005653_070 0.0604794303 - - K+ transport growth defect-like protein [Hevea brasiliensis]
3 Hb_000964_030 0.0715046651 - - ADP/ATP carrier 2 [Theobroma cacao]
4 Hb_000069_640 0.0894384846 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
5 Hb_008748_030 0.0899632779 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000753_230 0.0900681154 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
7 Hb_003913_130 0.0922830271 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
8 Hb_007386_040 0.095117153 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
9 Hb_189216_010 0.096649437 - - PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
10 Hb_000061_230 0.0969862117 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
11 Hb_000227_160 0.0972775071 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
12 Hb_033594_080 0.0975529069 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
13 Hb_012262_030 0.0982015145 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
14 Hb_001189_040 0.0984431322 - - hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
15 Hb_002272_030 0.0986022583 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
16 Hb_002045_070 0.0987579746 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
17 Hb_000012_310 0.0997051075 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
18 Hb_000140_090 0.1012524437 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
19 Hb_002660_170 0.1014777844 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
20 Hb_000723_230 0.1024648065 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]

Gene co-expression network

sample Hb_038574_010 Hb_038574_010 Hb_005653_070 Hb_005653_070 Hb_038574_010--Hb_005653_070 Hb_000964_030 Hb_000964_030 Hb_038574_010--Hb_000964_030 Hb_000069_640 Hb_000069_640 Hb_038574_010--Hb_000069_640 Hb_008748_030 Hb_008748_030 Hb_038574_010--Hb_008748_030 Hb_000753_230 Hb_000753_230 Hb_038574_010--Hb_000753_230 Hb_003913_130 Hb_003913_130 Hb_038574_010--Hb_003913_130 Hb_005653_070--Hb_000964_030 Hb_189216_010 Hb_189216_010 Hb_005653_070--Hb_189216_010 Hb_001728_040 Hb_001728_040 Hb_005653_070--Hb_001728_040 Hb_007218_120 Hb_007218_120 Hb_005653_070--Hb_007218_120 Hb_005653_070--Hb_000069_640 Hb_002119_130 Hb_002119_130 Hb_000964_030--Hb_002119_130 Hb_000252_100 Hb_000252_100 Hb_000964_030--Hb_000252_100 Hb_000964_030--Hb_007218_120 Hb_053709_050 Hb_053709_050 Hb_000964_030--Hb_053709_050 Hb_000080_130 Hb_000080_130 Hb_000069_640--Hb_000080_130 Hb_000603_160 Hb_000603_160 Hb_000069_640--Hb_000603_160 Hb_004754_050 Hb_004754_050 Hb_000069_640--Hb_004754_050 Hb_000705_230 Hb_000705_230 Hb_000069_640--Hb_000705_230 Hb_013394_050 Hb_013394_050 Hb_000069_640--Hb_013394_050 Hb_000227_160 Hb_000227_160 Hb_008748_030--Hb_000227_160 Hb_000012_310 Hb_000012_310 Hb_008748_030--Hb_000012_310 Hb_006452_120 Hb_006452_120 Hb_008748_030--Hb_006452_120 Hb_000574_450 Hb_000574_450 Hb_008748_030--Hb_000574_450 Hb_028487_160 Hb_028487_160 Hb_008748_030--Hb_028487_160 Hb_000778_010 Hb_000778_010 Hb_008748_030--Hb_000778_010 Hb_000173_470 Hb_000173_470 Hb_000753_230--Hb_000173_470 Hb_003688_180 Hb_003688_180 Hb_000753_230--Hb_003688_180 Hb_066920_030 Hb_066920_030 Hb_000753_230--Hb_066920_030 Hb_017387_010 Hb_017387_010 Hb_000753_230--Hb_017387_010 Hb_020178_040 Hb_020178_040 Hb_000753_230--Hb_020178_040 Hb_001357_200 Hb_001357_200 Hb_003913_130--Hb_001357_200 Hb_000025_350 Hb_000025_350 Hb_003913_130--Hb_000025_350 Hb_007533_040 Hb_007533_040 Hb_003913_130--Hb_007533_040 Hb_000638_130 Hb_000638_130 Hb_003913_130--Hb_000638_130 Hb_000140_090 Hb_000140_090 Hb_003913_130--Hb_000140_090 Hb_001014_060 Hb_001014_060 Hb_003913_130--Hb_001014_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9148 34.8398 31.9949 54.8986 8.8966 18.5269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.033 37.0874 38.5532 25.2726 33.3593

CAGE analysis