Hb_038601_010

Information

Type -
Description -
Location Contig38601: 102-625
Sequence    

Annotation

kegg
ID sot:102606280
description uncharacterized LOC102606280
nr
ID XP_006344223.1
description PREDICTED: uncharacterized protein LOC102606280 [Solanum tuberosum]
swissprot
ID -
description -
trembl
ID M1D071
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030549 PE=4 SV=1
Gene Ontology
ID GO:0016757
description peptidyl serine alpha-galactosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038601_010 0.0 - - PREDICTED: uncharacterized protein LOC102606280 [Solanum tuberosum]
2 Hb_002435_070 0.0445212424 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
3 Hb_006570_130 0.0810558446 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004725_040 0.0812423921 - - -
5 Hb_028707_060 0.1312413283 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]
6 Hb_008764_010 0.1383435851 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
7 Hb_154114_020 0.147334363 - - -
8 Hb_000604_080 0.1480057942 - - Fgenesh protein [Medicago truncatula]
9 Hb_011671_200 0.1745406578 - - -
10 Hb_105632_010 0.194936044 - - -
11 Hb_005743_020 0.1949362188 - - -
12 Hb_000495_090 0.1949686344 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
13 Hb_000073_070 0.1949933594 - - -
14 Hb_002893_140 0.1972748406 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
15 Hb_001274_060 0.1976721798 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
16 Hb_000380_030 0.1985203236 - - Kiwellin, putative [Ricinus communis]
17 Hb_000787_120 0.1989561648 - - 2S sulfur-rich seed storage protein precursor large subunit, putative [Ricinus communis]
18 Hb_003633_110 0.1991907013 - - hypothetical protein PRUPE_ppa019329mg [Prunus persica]
19 Hb_000976_420 0.199446631 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001459_070 0.2000326643 - - -

Gene co-expression network

sample Hb_038601_010 Hb_038601_010 Hb_002435_070 Hb_002435_070 Hb_038601_010--Hb_002435_070 Hb_006570_130 Hb_006570_130 Hb_038601_010--Hb_006570_130 Hb_004725_040 Hb_004725_040 Hb_038601_010--Hb_004725_040 Hb_028707_060 Hb_028707_060 Hb_038601_010--Hb_028707_060 Hb_008764_010 Hb_008764_010 Hb_038601_010--Hb_008764_010 Hb_154114_020 Hb_154114_020 Hb_038601_010--Hb_154114_020 Hb_002435_070--Hb_004725_040 Hb_002435_070--Hb_008764_010 Hb_002435_070--Hb_006570_130 Hb_011671_200 Hb_011671_200 Hb_002435_070--Hb_011671_200 Hb_000604_080 Hb_000604_080 Hb_002435_070--Hb_000604_080 Hb_006570_130--Hb_028707_060 Hb_006570_130--Hb_004725_040 Hb_000380_030 Hb_000380_030 Hb_006570_130--Hb_000380_030 Hb_000787_120 Hb_000787_120 Hb_006570_130--Hb_000787_120 Hb_004725_040--Hb_011671_200 Hb_004725_040--Hb_008764_010 Hb_000976_420 Hb_000976_420 Hb_004725_040--Hb_000976_420 Hb_055235_010 Hb_055235_010 Hb_028707_060--Hb_055235_010 Hb_107725_010 Hb_107725_010 Hb_028707_060--Hb_107725_010 Hb_001459_070 Hb_001459_070 Hb_028707_060--Hb_001459_070 Hb_003633_110 Hb_003633_110 Hb_028707_060--Hb_003633_110 Hb_028707_060--Hb_000787_120 Hb_005211_110 Hb_005211_110 Hb_008764_010--Hb_005211_110 Hb_048308_010 Hb_048308_010 Hb_008764_010--Hb_048308_010 Hb_001246_150 Hb_001246_150 Hb_008764_010--Hb_001246_150 Hb_142734_020 Hb_142734_020 Hb_008764_010--Hb_142734_020 Hb_154114_020--Hb_002435_070 Hb_000122_090 Hb_000122_090 Hb_154114_020--Hb_000122_090 Hb_000340_070 Hb_000340_070 Hb_154114_020--Hb_000340_070 Hb_154114_020--Hb_008764_010 Hb_000025_390 Hb_000025_390 Hb_154114_020--Hb_000025_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.203008 0.563866 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0612342 0

CAGE analysis