Hb_038675_010

Information

Type -
Description -
Location Contig38675: 23-921
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_011069484.1
description PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038675_010 0.0 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
2 Hb_059069_010 0.0011207789 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
3 Hb_011360_100 0.017828253 - - -
4 Hb_004458_050 0.0318149575 - - -
5 Hb_005741_010 0.0365585981 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
6 Hb_000195_050 0.0389833336 - - -
7 Hb_012194_010 0.0491465724 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
8 Hb_006275_030 0.0713032761 - - -
9 Hb_000563_290 0.0731604193 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
10 Hb_000574_020 0.0743624613 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002463_080 0.0821085689 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_003556_020 0.0853426974 - - PREDICTED: non-specific lipid-transfer protein D, cotyledon-specific isoform-like [Citrus sinensis]
13 Hb_010222_010 0.1327457676 - - -
14 Hb_002490_040 0.1329895935 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
15 Hb_000188_090 0.1360098894 - - JHL22C18.10 [Jatropha curcas]
16 Hb_004429_040 0.1388906773 - - -
17 Hb_000934_220 0.1417124374 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]
18 Hb_001887_030 0.16150099 - - -
19 Hb_044767_010 0.1645097836 - - -
20 Hb_066620_010 0.1673587248 - - hypothetical protein JCGZ_08269 [Jatropha curcas]

Gene co-expression network

sample Hb_038675_010 Hb_038675_010 Hb_059069_010 Hb_059069_010 Hb_038675_010--Hb_059069_010 Hb_011360_100 Hb_011360_100 Hb_038675_010--Hb_011360_100 Hb_004458_050 Hb_004458_050 Hb_038675_010--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_038675_010--Hb_005741_010 Hb_000195_050 Hb_000195_050 Hb_038675_010--Hb_000195_050 Hb_012194_010 Hb_012194_010 Hb_038675_010--Hb_012194_010 Hb_059069_010--Hb_011360_100 Hb_059069_010--Hb_004458_050 Hb_059069_010--Hb_005741_010 Hb_059069_010--Hb_000195_050 Hb_059069_010--Hb_012194_010 Hb_011360_100--Hb_004458_050 Hb_011360_100--Hb_005741_010 Hb_011360_100--Hb_012194_010 Hb_006275_030 Hb_006275_030 Hb_011360_100--Hb_006275_030 Hb_004458_050--Hb_005741_010 Hb_004458_050--Hb_012194_010 Hb_004458_050--Hb_006275_030 Hb_005741_010--Hb_012194_010 Hb_005741_010--Hb_006275_030 Hb_000563_290 Hb_000563_290 Hb_000195_050--Hb_000563_290 Hb_000195_050--Hb_011360_100 Hb_000195_050--Hb_004458_050 Hb_000195_050--Hb_005741_010 Hb_012194_010--Hb_006275_030 Hb_000574_020 Hb_000574_020 Hb_012194_010--Hb_000574_020 Hb_002463_080 Hb_002463_080 Hb_012194_010--Hb_002463_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0350506 0 0 0 0 0.0740148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis