Hb_038758_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig38758: 192-1311
Sequence    

Annotation

kegg
ID rcu:RCOM_0129350
description NAC domain-containing protein, putative
nr
ID XP_002532683.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID A0SPJ9
description NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=3 SV=1
trembl
ID B9T364
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_0129350 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38885: 551-1013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038758_010 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_000142_020 0.0656437185 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
3 Hb_000877_090 0.1605152987 - - allergenic-related protein Pt2L4 [Manihot esculenta]
4 Hb_002217_440 0.1768917252 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_000625_110 0.1863103896 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
6 Hb_001810_010 0.1889037911 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
7 Hb_012055_100 0.1976540677 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
8 Hb_008616_060 0.2005349064 - - syntaxin, putative [Ricinus communis]
9 Hb_000260_320 0.2027587465 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
10 Hb_000111_300 0.2035053844 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
11 Hb_004488_010 0.2045059674 - - hypothetical protein CISIN_1g019168mg [Citrus sinensis]
12 Hb_000977_160 0.2112464733 - - Serine-threonine protein kinase, plant-type, putative [Theobroma cacao]
13 Hb_005396_100 0.2157636854 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004195_190 0.222234595 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_001363_010 0.2226849355 - - hypothetical protein CISIN_1g027763mg [Citrus sinensis]
16 Hb_002417_030 0.224036171 - - PREDICTED: purine permease 3-like [Jatropha curcas]
17 Hb_006198_170 0.2284067398 - - PREDICTED: serine/threonine-protein kinase At3g07070-like [Jatropha curcas]
18 Hb_003100_010 0.2303411736 - - PREDICTED: uncharacterized protein LOC101217345 [Cucumis sativus]
19 Hb_000535_030 0.2303827554 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
20 Hb_000417_290 0.231608463 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_038758_010 Hb_038758_010 Hb_000142_020 Hb_000142_020 Hb_038758_010--Hb_000142_020 Hb_000877_090 Hb_000877_090 Hb_038758_010--Hb_000877_090 Hb_002217_440 Hb_002217_440 Hb_038758_010--Hb_002217_440 Hb_000625_110 Hb_000625_110 Hb_038758_010--Hb_000625_110 Hb_001810_010 Hb_001810_010 Hb_038758_010--Hb_001810_010 Hb_012055_100 Hb_012055_100 Hb_038758_010--Hb_012055_100 Hb_000142_020--Hb_002217_440 Hb_000142_020--Hb_000877_090 Hb_004488_010 Hb_004488_010 Hb_000142_020--Hb_004488_010 Hb_000142_020--Hb_000625_110 Hb_000142_020--Hb_001810_010 Hb_000260_320 Hb_000260_320 Hb_000877_090--Hb_000260_320 Hb_000877_090--Hb_012055_100 Hb_002019_030 Hb_002019_030 Hb_000877_090--Hb_002019_030 Hb_003376_340 Hb_003376_340 Hb_000877_090--Hb_003376_340 Hb_000532_060 Hb_000532_060 Hb_000877_090--Hb_000532_060 Hb_046117_050 Hb_046117_050 Hb_000877_090--Hb_046117_050 Hb_013057_030 Hb_013057_030 Hb_002217_440--Hb_013057_030 Hb_002217_440--Hb_001810_010 Hb_048653_020 Hb_048653_020 Hb_002217_440--Hb_048653_020 Hb_000417_290 Hb_000417_290 Hb_002217_440--Hb_000417_290 Hb_008616_060 Hb_008616_060 Hb_002217_440--Hb_008616_060 Hb_048653_040 Hb_048653_040 Hb_002217_440--Hb_048653_040 Hb_002417_030 Hb_002417_030 Hb_000625_110--Hb_002417_030 Hb_003100_010 Hb_003100_010 Hb_000625_110--Hb_003100_010 Hb_006198_170 Hb_006198_170 Hb_000625_110--Hb_006198_170 Hb_011689_140 Hb_011689_140 Hb_000625_110--Hb_011689_140 Hb_012268_010 Hb_012268_010 Hb_001810_010--Hb_012268_010 Hb_000940_020 Hb_000940_020 Hb_001810_010--Hb_000940_020 Hb_005396_100 Hb_005396_100 Hb_001810_010--Hb_005396_100 Hb_001363_010 Hb_001363_010 Hb_001810_010--Hb_001363_010 Hb_000345_190 Hb_000345_190 Hb_001810_010--Hb_000345_190 Hb_012055_100--Hb_000260_320 Hb_012055_100--Hb_046117_050 Hb_012055_100--Hb_000532_060 Hb_001487_020 Hb_001487_020 Hb_012055_100--Hb_001487_020 Hb_150643_010 Hb_150643_010 Hb_012055_100--Hb_150643_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03242 94.3178 0.0971209 1.83527 0.494908 0.631629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.09898 5.64571 1.72211 36.044 0.797597

CAGE analysis