Hb_038927_020

Information

Type -
Description -
Location Contig38927: 6155-7716
Sequence    

Annotation

kegg
ID cmo:103484479
description rac-like GTP-binding protein RAC13
nr
ID XP_008439788.1
description PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
swissprot
ID Q6Z7L8
description Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1
trembl
ID A0A0A0KI71
description Uncharacterized protein OS=Cucumis sativus GN=Csa_6G518280 PE=4 SV=1
Gene Ontology
ID GO:0005622
description rac-like gtp-binding protein rac13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38989: 6070-7567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038927_020 0.0 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
2 Hb_002311_010 0.0334266816 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
3 Hb_000416_020 0.0485855796 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001935_060 0.049466598 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
5 Hb_007281_010 0.0495033963 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_001377_220 0.0579670388 - - dopamine beta-monooxygenase, putative [Ricinus communis]
7 Hb_002739_140 0.0600681266 - - PREDICTED: protein TPX2 [Jatropha curcas]
8 Hb_001712_030 0.061231624 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
9 Hb_010166_010 0.0628624694 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
10 Hb_004920_150 0.0666759083 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001014_180 0.0722611938 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
12 Hb_002078_180 0.072692686 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
13 Hb_000462_040 0.0743550964 - - ATSMC2, putative [Ricinus communis]
14 Hb_003972_070 0.0748779782 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
15 Hb_008705_080 0.0781854768 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
16 Hb_026198_080 0.0794137635 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
17 Hb_158092_090 0.0807971587 - - zinc finger protein, putative [Ricinus communis]
18 Hb_000776_090 0.0810453975 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
19 Hb_000173_240 0.0827887316 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000193_320 0.082809821 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_038927_020 Hb_038927_020 Hb_002311_010 Hb_002311_010 Hb_038927_020--Hb_002311_010 Hb_000416_020 Hb_000416_020 Hb_038927_020--Hb_000416_020 Hb_001935_060 Hb_001935_060 Hb_038927_020--Hb_001935_060 Hb_007281_010 Hb_007281_010 Hb_038927_020--Hb_007281_010 Hb_001377_220 Hb_001377_220 Hb_038927_020--Hb_001377_220 Hb_002739_140 Hb_002739_140 Hb_038927_020--Hb_002739_140 Hb_002311_010--Hb_001935_060 Hb_002311_010--Hb_007281_010 Hb_002311_010--Hb_001377_220 Hb_002311_010--Hb_000416_020 Hb_010166_010 Hb_010166_010 Hb_002311_010--Hb_010166_010 Hb_000416_020--Hb_001935_060 Hb_000416_020--Hb_010166_010 Hb_158092_090 Hb_158092_090 Hb_000416_020--Hb_158092_090 Hb_000416_020--Hb_001377_220 Hb_001935_060--Hb_001377_220 Hb_001935_060--Hb_010166_010 Hb_002078_180 Hb_002078_180 Hb_001935_060--Hb_002078_180 Hb_005686_040 Hb_005686_040 Hb_001935_060--Hb_005686_040 Hb_001014_180 Hb_001014_180 Hb_007281_010--Hb_001014_180 Hb_000462_040 Hb_000462_040 Hb_007281_010--Hb_000462_040 Hb_034507_030 Hb_034507_030 Hb_007281_010--Hb_034507_030 Hb_001712_030 Hb_001712_030 Hb_007281_010--Hb_001712_030 Hb_001377_220--Hb_010166_010 Hb_002662_070 Hb_002662_070 Hb_001377_220--Hb_002662_070 Hb_001377_220--Hb_005686_040 Hb_001377_220--Hb_002078_180 Hb_004920_150 Hb_004920_150 Hb_002739_140--Hb_004920_150 Hb_000776_090 Hb_000776_090 Hb_002739_140--Hb_000776_090 Hb_003972_070 Hb_003972_070 Hb_002739_140--Hb_003972_070 Hb_010488_050 Hb_010488_050 Hb_002739_140--Hb_010488_050 Hb_050514_030 Hb_050514_030 Hb_002739_140--Hb_050514_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.216957 2.80711 5.31204 70.9314 0.180511 0.0263346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0537559 0 0 0.391497 65.9324

CAGE analysis