Hb_039262_010

Information

Type -
Description -
Location Contig39262: 10-648
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039262_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_016482_010 0.1580027913 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_002888_020 0.2469811773 - - -
4 Hb_000976_230 0.256526471 - - PREDICTED: probable terpene synthase 4 [Jatropha curcas]
5 Hb_036311_020 0.2595627094 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_000399_010 0.2605261157 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
7 Hb_042202_050 0.2654747491 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
8 Hb_000932_100 0.2668547024 - - -
9 Hb_000052_020 0.2685172916 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
10 Hb_185447_010 0.2800223731 - - hypothetical protein JCGZ_13512 [Jatropha curcas]
11 Hb_001617_020 0.280957958 - - multidrug resistance pump, putative [Ricinus communis]
12 Hb_000012_460 0.2810143878 - - unknown [Populus trichocarpa]
13 Hb_159036_010 0.2814124516 - - -
14 Hb_044187_010 0.2816543831 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
15 Hb_012760_190 0.2821513971 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
16 Hb_000836_530 0.2873554345 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
17 Hb_000946_140 0.288714516 - - -
18 Hb_012572_020 0.2887882535 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_002243_070 0.2890647343 - - sodium-bile acid cotransporter, putative [Ricinus communis]
20 Hb_000160_320 0.2899510857 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]

Gene co-expression network

sample Hb_039262_010 Hb_039262_010 Hb_016482_010 Hb_016482_010 Hb_039262_010--Hb_016482_010 Hb_002888_020 Hb_002888_020 Hb_039262_010--Hb_002888_020 Hb_000976_230 Hb_000976_230 Hb_039262_010--Hb_000976_230 Hb_036311_020 Hb_036311_020 Hb_039262_010--Hb_036311_020 Hb_000399_010 Hb_000399_010 Hb_039262_010--Hb_000399_010 Hb_042202_050 Hb_042202_050 Hb_039262_010--Hb_042202_050 Hb_159036_010 Hb_159036_010 Hb_016482_010--Hb_159036_010 Hb_012572_020 Hb_012572_020 Hb_016482_010--Hb_012572_020 Hb_000032_480 Hb_000032_480 Hb_016482_010--Hb_000032_480 Hb_000906_130 Hb_000906_130 Hb_016482_010--Hb_000906_130 Hb_001617_020 Hb_001617_020 Hb_016482_010--Hb_001617_020 Hb_002243_070 Hb_002243_070 Hb_002888_020--Hb_002243_070 Hb_002874_040 Hb_002874_040 Hb_002888_020--Hb_002874_040 Hb_004440_080 Hb_004440_080 Hb_002888_020--Hb_004440_080 Hb_086077_020 Hb_086077_020 Hb_002888_020--Hb_086077_020 Hb_000012_160 Hb_000012_160 Hb_002888_020--Hb_000012_160 Hb_000010_340 Hb_000010_340 Hb_000976_230--Hb_000010_340 Hb_001049_110 Hb_001049_110 Hb_000976_230--Hb_001049_110 Hb_001546_060 Hb_001546_060 Hb_000976_230--Hb_001546_060 Hb_012760_190 Hb_012760_190 Hb_000976_230--Hb_012760_190 Hb_003976_020 Hb_003976_020 Hb_000976_230--Hb_003976_020 Hb_001817_020 Hb_001817_020 Hb_000976_230--Hb_001817_020 Hb_001523_020 Hb_001523_020 Hb_036311_020--Hb_001523_020 Hb_000283_080 Hb_000283_080 Hb_036311_020--Hb_000283_080 Hb_129910_010 Hb_129910_010 Hb_036311_020--Hb_129910_010 Hb_000362_120 Hb_000362_120 Hb_036311_020--Hb_000362_120 Hb_001511_070 Hb_001511_070 Hb_036311_020--Hb_001511_070 Hb_000160_320 Hb_000160_320 Hb_036311_020--Hb_000160_320 Hb_011484_010 Hb_011484_010 Hb_000399_010--Hb_011484_010 Hb_000772_040 Hb_000772_040 Hb_000399_010--Hb_000772_040 Hb_000399_010--Hb_000283_080 Hb_000399_010--Hb_036311_020 Hb_003906_090 Hb_003906_090 Hb_000399_010--Hb_003906_090 Hb_000399_010--Hb_001523_020 Hb_001284_010 Hb_001284_010 Hb_042202_050--Hb_001284_010 Hb_000052_020 Hb_000052_020 Hb_042202_050--Hb_000052_020 Hb_000156_210 Hb_000156_210 Hb_042202_050--Hb_000156_210 Hb_006738_020 Hb_006738_020 Hb_042202_050--Hb_006738_020 Hb_000997_360 Hb_000997_360 Hb_042202_050--Hb_000997_360 Hb_146680_010 Hb_146680_010 Hb_042202_050--Hb_146680_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175231 0 0 0 0.293938 0.0780847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.203465 0.239856 0.41919 0.131191 0.618404

CAGE analysis