Hb_039342_010

Information

Type -
Description -
Location Contig39342: 8940-16739
Sequence    

Annotation

kegg
ID tcc:TCM_029740
description Pyruvate decarboxylase-2 isoform 1
nr
ID AIE47262.1
description pyruvate decarboxylase [Hevea brasiliensis]
swissprot
ID A2XFI3
description Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica GN=PDC2 PE=2 SV=2
trembl
ID T1LMK9
description Uncharacterized protein OS=Triticum urartu PE=4 SV=1
Gene Ontology
ID GO:0000287
description pyruvate decarboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39403: 8993-15022
cDNA
(Sanger)
(ID:Location)		 042_B19.ab1: 9294-10074

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039342_010 0.0 - - pyruvate decarboxylase [Hevea brasiliensis]
2 Hb_010270_010 0.1038828121 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_144096_010 0.1347582118 - - aldo-keto reductase, putative [Ricinus communis]
4 Hb_008221_170 0.1358899023 transcription factor TF Family: BES1 PREDICTED: BES1/BZR1 homolog protein 4 isoform X1 [Populus euphratica]
5 Hb_000371_060 0.1427088245 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
6 Hb_007426_140 0.1475011517 - - ornithine aminotransferase, putative [Ricinus communis]
7 Hb_000215_100 0.1483335988 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001799_190 0.1489006968 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
9 Hb_000009_330 0.1489578298 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
10 Hb_002836_100 0.1507769155 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
11 Hb_002272_170 0.1517523208 - - PREDICTED: branched-chain-amino-acid aminotransferase-like protein 1 [Jatropha curcas]
12 Hb_001675_010 0.1524834729 - - hypothetical protein TRIUR3_09961 [Triticum urartu]
13 Hb_011716_110 0.1525484738 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
14 Hb_083799_010 0.1527499573 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_062416_010 0.1540489691 - - PREDICTED: UPF0202 protein At1g10490 [Jatropha curcas]
16 Hb_001160_070 0.1550904256 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
17 Hb_022250_150 0.1557019449 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
18 Hb_001414_040 0.1559049426 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Jatropha curcas]
19 Hb_000174_140 0.1596408242 - - JHL23J11.8 [Jatropha curcas]
20 Hb_000856_180 0.1601128635 - - calcium-dependent protein kinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_039342_010 Hb_039342_010 Hb_010270_010 Hb_010270_010 Hb_039342_010--Hb_010270_010 Hb_144096_010 Hb_144096_010 Hb_039342_010--Hb_144096_010 Hb_008221_170 Hb_008221_170 Hb_039342_010--Hb_008221_170 Hb_000371_060 Hb_000371_060 Hb_039342_010--Hb_000371_060 Hb_007426_140 Hb_007426_140 Hb_039342_010--Hb_007426_140 Hb_000215_100 Hb_000215_100 Hb_039342_010--Hb_000215_100 Hb_001122_010 Hb_001122_010 Hb_010270_010--Hb_001122_010 Hb_002781_010 Hb_002781_010 Hb_010270_010--Hb_002781_010 Hb_001675_010 Hb_001675_010 Hb_010270_010--Hb_001675_010 Hb_001799_190 Hb_001799_190 Hb_010270_010--Hb_001799_190 Hb_011716_110 Hb_011716_110 Hb_010270_010--Hb_011716_110 Hb_018118_030 Hb_018118_030 Hb_144096_010--Hb_018118_030 Hb_005188_030 Hb_005188_030 Hb_144096_010--Hb_005188_030 Hb_030736_070 Hb_030736_070 Hb_144096_010--Hb_030736_070 Hb_000051_050 Hb_000051_050 Hb_144096_010--Hb_000051_050 Hb_000739_080 Hb_000739_080 Hb_144096_010--Hb_000739_080 Hb_002046_020 Hb_002046_020 Hb_008221_170--Hb_002046_020 Hb_002631_200 Hb_002631_200 Hb_008221_170--Hb_002631_200 Hb_001105_160 Hb_001105_160 Hb_008221_170--Hb_001105_160 Hb_000487_380 Hb_000487_380 Hb_008221_170--Hb_000487_380 Hb_002662_050 Hb_002662_050 Hb_008221_170--Hb_002662_050 Hb_007576_200 Hb_007576_200 Hb_008221_170--Hb_007576_200 Hb_001414_040 Hb_001414_040 Hb_000371_060--Hb_001414_040 Hb_002524_020 Hb_002524_020 Hb_000371_060--Hb_002524_020 Hb_001259_120 Hb_001259_120 Hb_000371_060--Hb_001259_120 Hb_001195_350 Hb_001195_350 Hb_000371_060--Hb_001195_350 Hb_001257_100 Hb_001257_100 Hb_000371_060--Hb_001257_100 Hb_000059_130 Hb_000059_130 Hb_000371_060--Hb_000059_130 Hb_000395_220 Hb_000395_220 Hb_007426_140--Hb_000395_220 Hb_083799_010 Hb_083799_010 Hb_007426_140--Hb_083799_010 Hb_002836_100 Hb_002836_100 Hb_007426_140--Hb_002836_100 Hb_006829_100 Hb_006829_100 Hb_007426_140--Hb_006829_100 Hb_075315_010 Hb_075315_010 Hb_007426_140--Hb_075315_010 Hb_003849_240 Hb_003849_240 Hb_007426_140--Hb_003849_240 Hb_000640_130 Hb_000640_130 Hb_000215_100--Hb_000640_130 Hb_001055_030 Hb_001055_030 Hb_000215_100--Hb_001055_030 Hb_000976_040 Hb_000976_040 Hb_000215_100--Hb_000976_040 Hb_000009_330 Hb_000009_330 Hb_000215_100--Hb_000009_330 Hb_001318_020 Hb_001318_020 Hb_000215_100--Hb_001318_020 Hb_008160_030 Hb_008160_030 Hb_000215_100--Hb_008160_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8861 45.739 15.0285 35.935 13.2372 13.2388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.88813 6.18229 10.738 42.5154 4.22739

CAGE analysis