Hb_039440_010

Information

Type -
Description -
Location Contig39440: 1235-1660
Sequence    

Annotation

kegg
ID rcu:RCOM_0584600
description hypothetical protein
nr
ID XP_002522942.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SAC3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039440_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_185437_010 0.0327773987 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
3 Hb_001518_050 0.046213348 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_160950_010 0.0555241248 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
5 Hb_010252_010 0.0633322323 - - -
6 Hb_000072_010 0.0696954174 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
7 Hb_009083_020 0.0705117471 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
8 Hb_000025_800 0.0753146277 - - hypothetical protein VITISV_020143 [Vitis vinifera]
9 Hb_005773_010 0.0779587427 - - -
10 Hb_002163_070 0.0804982271 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
11 Hb_119583_030 0.0897603484 - - unnamed protein product [Vitis vinifera]
12 Hb_005428_010 0.092901747 - - cytochrome P450, putative [Ricinus communis]
13 Hb_149194_010 0.1109581432 - - hypothetical protein JCGZ_17021 [Jatropha curcas]
14 Hb_003073_060 0.1160846222 - - -
15 Hb_104855_010 0.1189547953 - - -
16 Hb_137862_020 0.1215543983 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
17 Hb_000248_080 0.1238753025 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_011671_360 0.1255950296 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
19 Hb_000628_050 0.1264655692 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_057721_010 0.1274978613 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_039440_010 Hb_039440_010 Hb_185437_010 Hb_185437_010 Hb_039440_010--Hb_185437_010 Hb_001518_050 Hb_001518_050 Hb_039440_010--Hb_001518_050 Hb_160950_010 Hb_160950_010 Hb_039440_010--Hb_160950_010 Hb_010252_010 Hb_010252_010 Hb_039440_010--Hb_010252_010 Hb_000072_010 Hb_000072_010 Hb_039440_010--Hb_000072_010 Hb_009083_020 Hb_009083_020 Hb_039440_010--Hb_009083_020 Hb_185437_010--Hb_001518_050 Hb_000025_800 Hb_000025_800 Hb_185437_010--Hb_000025_800 Hb_185437_010--Hb_010252_010 Hb_119583_030 Hb_119583_030 Hb_185437_010--Hb_119583_030 Hb_185437_010--Hb_160950_010 Hb_001518_050--Hb_000025_800 Hb_001518_050--Hb_119583_030 Hb_001518_050--Hb_010252_010 Hb_001518_050--Hb_160950_010 Hb_160950_010--Hb_009083_020 Hb_160950_010--Hb_010252_010 Hb_002163_070 Hb_002163_070 Hb_160950_010--Hb_002163_070 Hb_000248_080 Hb_000248_080 Hb_160950_010--Hb_000248_080 Hb_010252_010--Hb_002163_070 Hb_010252_010--Hb_009083_020 Hb_010252_010--Hb_119583_030 Hb_010252_010--Hb_000025_800 Hb_005773_010 Hb_005773_010 Hb_000072_010--Hb_005773_010 Hb_104855_010 Hb_104855_010 Hb_000072_010--Hb_104855_010 Hb_011671_360 Hb_011671_360 Hb_000072_010--Hb_011671_360 Hb_005428_010 Hb_005428_010 Hb_000072_010--Hb_005428_010 Hb_000072_010--Hb_160950_010 Hb_009083_020--Hb_002163_070 Hb_009083_020--Hb_000248_080 Hb_137862_020 Hb_137862_020 Hb_009083_020--Hb_137862_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.191544 0.278809 0.518198 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis