Hb_039496_010

Information

Type -
Description -
Location Contig39496: 776-4944
Sequence    

Annotation

kegg
ID rcu:RCOM_0024820
description multidrug resistance pump, putative
nr
ID XP_012085478.1
description PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A067JRX8
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_17810 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039496_010 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
2 Hb_003787_060 0.0637923588 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
3 Hb_003805_080 0.0814941458 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
4 Hb_000934_290 0.0829446487 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000963_010 0.0880636542 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
6 Hb_028008_030 0.0966626961 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
7 Hb_003788_010 0.0996298087 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
8 Hb_008705_040 0.1052270441 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
9 Hb_188923_010 0.114206913 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
10 Hb_094637_010 0.1151497642 - - PREDICTED: uncharacterized protein LOC105642042 [Jatropha curcas]
11 Hb_001998_260 0.1170367963 - - cytochrome P450, putative [Ricinus communis]
12 Hb_150084_010 0.1233756192 - - PREDICTED: premnaspirodiene oxygenase-like [Vitis vinifera]
13 Hb_000276_030 0.1238276148 - - dimethylaniline monooxygenase, putative [Ricinus communis]
14 Hb_130967_010 0.1239907596 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_111147_010 0.1260214631 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001158_080 0.1268720224 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
17 Hb_184942_010 0.1283409682 - - STS14 protein precursor, putative [Ricinus communis]
18 Hb_008140_060 0.1292645443 - - Cytochrome P450, putative [Theobroma cacao]
19 Hb_000300_170 0.1293960101 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
20 Hb_001799_090 0.1297979006 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_039496_010 Hb_039496_010 Hb_003787_060 Hb_003787_060 Hb_039496_010--Hb_003787_060 Hb_003805_080 Hb_003805_080 Hb_039496_010--Hb_003805_080 Hb_000934_290 Hb_000934_290 Hb_039496_010--Hb_000934_290 Hb_000963_010 Hb_000963_010 Hb_039496_010--Hb_000963_010 Hb_028008_030 Hb_028008_030 Hb_039496_010--Hb_028008_030 Hb_003788_010 Hb_003788_010 Hb_039496_010--Hb_003788_010 Hb_003787_060--Hb_003805_080 Hb_188923_010 Hb_188923_010 Hb_003787_060--Hb_188923_010 Hb_003787_060--Hb_000963_010 Hb_003787_060--Hb_000934_290 Hb_003734_120 Hb_003734_120 Hb_003787_060--Hb_003734_120 Hb_003805_080--Hb_028008_030 Hb_003805_080--Hb_188923_010 Hb_000230_160 Hb_000230_160 Hb_003805_080--Hb_000230_160 Hb_003058_180 Hb_003058_180 Hb_003805_080--Hb_003058_180 Hb_008140_060 Hb_008140_060 Hb_000934_290--Hb_008140_060 Hb_000934_290--Hb_003788_010 Hb_001158_080 Hb_001158_080 Hb_000934_290--Hb_001158_080 Hb_094637_010 Hb_094637_010 Hb_000934_290--Hb_094637_010 Hb_150084_010 Hb_150084_010 Hb_000963_010--Hb_150084_010 Hb_002333_010 Hb_002333_010 Hb_000963_010--Hb_002333_010 Hb_184942_010 Hb_184942_010 Hb_000963_010--Hb_184942_010 Hb_012787_050 Hb_012787_050 Hb_000963_010--Hb_012787_050 Hb_028008_030--Hb_000230_160 Hb_001799_090 Hb_001799_090 Hb_028008_030--Hb_001799_090 Hb_001998_260 Hb_001998_260 Hb_028008_030--Hb_001998_260 Hb_003967_010 Hb_003967_010 Hb_028008_030--Hb_003967_010 Hb_130967_010 Hb_130967_010 Hb_003788_010--Hb_130967_010 Hb_000335_050 Hb_000335_050 Hb_003788_010--Hb_000335_050 Hb_009581_050 Hb_009581_050 Hb_003788_010--Hb_009581_050 Hb_012807_060 Hb_012807_060 Hb_003788_010--Hb_012807_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.427038 0.118522 0.569493 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.970944 0.0954591

CAGE analysis