Hb_039562_010

Information

Type -
Description -
Location Contig39562: 1100-2288
Sequence    

Annotation

kegg
ID pop:POPTR_0001s39130g
description POPTRDRAFT_829917; SENESCENCE-RELATED GENE 1 family protein
nr
ID XP_012087516.1
description PREDICTED: protein SRG1-like [Jatropha curcas]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID A0A067JLZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23994 PE=3 SV=1
Gene Ontology
ID GO:0045431
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39557: 2095-2381
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039562_010 0.0 - - PREDICTED: protein SRG1-like [Jatropha curcas]
2 Hb_000318_440 0.0539957011 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
3 Hb_003968_020 0.0773305373 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
4 Hb_004693_010 0.0789289675 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
5 Hb_135392_010 0.078990309 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
6 Hb_004097_080 0.0807507447 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
7 Hb_002173_080 0.0828096733 - - alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_058620_010 0.0841263542 - - cytochrome P450, putative [Ricinus communis]
9 Hb_002805_230 0.0842409024 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
10 Hb_003090_070 0.0863997468 - - PREDICTED: laccase-7 [Jatropha curcas]
11 Hb_006620_040 0.0879798827 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
12 Hb_000712_070 0.0888083311 - - conserved hypothetical protein [Ricinus communis]
13 Hb_023732_020 0.09010305 - - PREDICTED: fatty acyl-CoA reductase 3-like [Jatropha curcas]
14 Hb_023080_010 0.0903631674 - - PREDICTED: probable serine incorporator [Jatropha curcas]
15 Hb_001134_040 0.0915978884 - - PREDICTED: EG45-like domain containing protein [Jatropha curcas]
16 Hb_000221_200 0.0930362698 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
17 Hb_007532_050 0.0987192903 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
18 Hb_000712_060 0.0990712518 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
19 Hb_007417_020 0.0998270608 - - Reticuline oxidase precursor, putative [Ricinus communis]
20 Hb_000487_150 0.1029658889 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_039562_010 Hb_039562_010 Hb_000318_440 Hb_000318_440 Hb_039562_010--Hb_000318_440 Hb_003968_020 Hb_003968_020 Hb_039562_010--Hb_003968_020 Hb_004693_010 Hb_004693_010 Hb_039562_010--Hb_004693_010 Hb_135392_010 Hb_135392_010 Hb_039562_010--Hb_135392_010 Hb_004097_080 Hb_004097_080 Hb_039562_010--Hb_004097_080 Hb_002173_080 Hb_002173_080 Hb_039562_010--Hb_002173_080 Hb_000318_440--Hb_004693_010 Hb_000059_100 Hb_000059_100 Hb_000318_440--Hb_000059_100 Hb_007532_050 Hb_007532_050 Hb_000318_440--Hb_007532_050 Hb_002805_230 Hb_002805_230 Hb_000318_440--Hb_002805_230 Hb_003090_070 Hb_003090_070 Hb_000318_440--Hb_003090_070 Hb_000076_200 Hb_000076_200 Hb_003968_020--Hb_000076_200 Hb_023080_010 Hb_023080_010 Hb_003968_020--Hb_023080_010 Hb_006620_040 Hb_006620_040 Hb_003968_020--Hb_006620_040 Hb_000281_200 Hb_000281_200 Hb_003968_020--Hb_000281_200 Hb_001288_010 Hb_001288_010 Hb_003968_020--Hb_001288_010 Hb_058620_050 Hb_058620_050 Hb_004693_010--Hb_058620_050 Hb_058620_040 Hb_058620_040 Hb_004693_010--Hb_058620_040 Hb_000712_070 Hb_000712_070 Hb_004693_010--Hb_000712_070 Hb_000141_070 Hb_000141_070 Hb_004693_010--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_004693_010--Hb_003334_080 Hb_007417_020 Hb_007417_020 Hb_135392_010--Hb_007417_020 Hb_007491_010 Hb_007491_010 Hb_135392_010--Hb_007491_010 Hb_001134_040 Hb_001134_040 Hb_135392_010--Hb_001134_040 Hb_058620_010 Hb_058620_010 Hb_135392_010--Hb_058620_010 Hb_001464_010 Hb_001464_010 Hb_135392_010--Hb_001464_010 Hb_135392_010--Hb_004097_080 Hb_004097_080--Hb_058620_010 Hb_004097_080--Hb_000712_070 Hb_004097_080--Hb_003334_080 Hb_004097_080--Hb_001134_040 Hb_003189_030 Hb_003189_030 Hb_002173_080--Hb_003189_030 Hb_000487_150 Hb_000487_150 Hb_002173_080--Hb_000487_150 Hb_003237_040 Hb_003237_040 Hb_002173_080--Hb_003237_040 Hb_002173_080--Hb_000318_440 Hb_002173_080--Hb_004097_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.193838 0.149846 0.42669 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 12.8709 0.401478

CAGE analysis