Hb_039650_010

Information

Type -
Description -
Location Contig39650: 3256-7512
Sequence    

Annotation

kegg
ID rcu:RCOM_1312160
description transferase, putative (EC:2.4.1.12)
nr
ID AFZ78596.1
description cellulose synthase-like protein [Populus tomentosa]
swissprot
ID Q0WVN5
description Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2
trembl
ID L0ASV8
description Cellulose synthase-like protein OS=Populus tomentosa PE=4 SV=1
Gene Ontology
ID GO:0016021
description cellulose synthase-like protein g3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39583: 6069-7744
cDNA
(Sanger)
(ID:Location)		 017_H08.ab1: 6143-7104 , 022_H09.ab1: 6143-6997 , 042_B01.ab1: 6143-7113 , 043_B01.ab1: 6143-7029 , 051_M08.ab1: 6143-7085

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039650_010 0.0 - - cellulose synthase-like protein [Populus tomentosa]
2 Hb_005000_230 0.0707765633 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
3 Hb_008707_020 0.0851182893 - - ATP binding protein, putative [Ricinus communis]
4 Hb_011924_030 0.0875470903 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000284_060 0.0899986604 desease resistance Gene Name: NB-ARC disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
6 Hb_002025_370 0.1004562664 - - monooxygenase, putative [Ricinus communis]
7 Hb_005081_060 0.1024470712 - - hypothetical protein EUGRSUZ_C00833 [Eucalyptus grandis]
8 Hb_004940_090 0.1058178532 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
9 Hb_003847_140 0.1076532754 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
10 Hb_001274_040 0.115188602 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
11 Hb_000871_020 0.1171339388 - - receptor-kinase, putative [Ricinus communis]
12 Hb_001850_010 0.1180163952 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
13 Hb_000035_360 0.1217964169 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
14 Hb_004652_050 0.1226284087 - - hypothetical protein POPTR_0001s15360g [Populus trichocarpa]
15 Hb_001403_070 0.1232273897 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
16 Hb_066262_010 0.1289395836 - - hypothetical protein JCGZ_14798 [Jatropha curcas]
17 Hb_001376_020 0.129186701 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
18 Hb_000119_050 0.129536465 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
19 Hb_067034_010 0.1356428511 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
20 Hb_007850_050 0.1376215335 - - flavonoid 3-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_039650_010 Hb_039650_010 Hb_005000_230 Hb_005000_230 Hb_039650_010--Hb_005000_230 Hb_008707_020 Hb_008707_020 Hb_039650_010--Hb_008707_020 Hb_011924_030 Hb_011924_030 Hb_039650_010--Hb_011924_030 Hb_000284_060 Hb_000284_060 Hb_039650_010--Hb_000284_060 Hb_002025_370 Hb_002025_370 Hb_039650_010--Hb_002025_370 Hb_005081_060 Hb_005081_060 Hb_039650_010--Hb_005081_060 Hb_005000_230--Hb_008707_020 Hb_005000_230--Hb_011924_030 Hb_005000_230--Hb_000284_060 Hb_001403_070 Hb_001403_070 Hb_005000_230--Hb_001403_070 Hb_007850_050 Hb_007850_050 Hb_005000_230--Hb_007850_050 Hb_001376_020 Hb_001376_020 Hb_008707_020--Hb_001376_020 Hb_000035_360 Hb_000035_360 Hb_008707_020--Hb_000035_360 Hb_003847_140 Hb_003847_140 Hb_008707_020--Hb_003847_140 Hb_008707_020--Hb_011924_030 Hb_001486_130 Hb_001486_130 Hb_008707_020--Hb_001486_130 Hb_000871_020 Hb_000871_020 Hb_011924_030--Hb_000871_020 Hb_011924_030--Hb_000035_360 Hb_011924_030--Hb_000284_060 Hb_011924_030--Hb_003847_140 Hb_000796_100 Hb_000796_100 Hb_011924_030--Hb_000796_100 Hb_009740_010 Hb_009740_010 Hb_011924_030--Hb_009740_010 Hb_000284_060--Hb_000035_360 Hb_000284_060--Hb_008707_020 Hb_000284_060--Hb_000871_020 Hb_000233_060 Hb_000233_060 Hb_000284_060--Hb_000233_060 Hb_000111_130 Hb_000111_130 Hb_002025_370--Hb_000111_130 Hb_004940_090 Hb_004940_090 Hb_002025_370--Hb_004940_090 Hb_001365_040 Hb_001365_040 Hb_002025_370--Hb_001365_040 Hb_001274_040 Hb_001274_040 Hb_002025_370--Hb_001274_040 Hb_002025_370--Hb_008707_020 Hb_005081_060--Hb_003847_140 Hb_000656_360 Hb_000656_360 Hb_005081_060--Hb_000656_360 Hb_005081_060--Hb_001274_040 Hb_005081_060--Hb_008707_020 Hb_001437_200 Hb_001437_200 Hb_005081_060--Hb_001437_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00920003 41.1359 0.511296 0.926463 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0417983 0 0 3.426 1.32322

CAGE analysis