Hb_039650_030

Information

Type -
Description -
Location Contig39650: 14257-14961
Sequence    

Annotation

kegg
ID rcu:RCOM_2128750
description hypothetical protein
nr
ID XP_002537254.1
description hypothetical protein RCOM_2128750 [Ricinus communis]
swissprot
ID O82859
description Cellulose synthase catalytic subunit [UDP-forming] OS=Komagataeibacter xylinus GN=bcsA PE=3 SV=1
trembl
ID B9TG85
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2128750 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cellulose synthase-like protein g3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039650_030 0.0 - - hypothetical protein RCOM_2128750 [Ricinus communis]
2 Hb_000175_250 0.0799867685 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
3 Hb_004924_030 0.0881776178 - - -
4 Hb_000247_150 0.1159051917 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
5 Hb_006873_030 0.1213414095 - - receptor serine/threonine kinase, putative [Ricinus communis]
6 Hb_035677_010 0.1225247681 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007328_010 0.1308742344 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
8 Hb_012496_010 0.1357679093 - - kinase, putative [Ricinus communis]
9 Hb_000331_710 0.136082314 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_091913_010 0.1389049024 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
11 Hb_001677_130 0.1409658721 - - hypothetical protein POPTR_0081s002101g, partial [Populus trichocarpa]
12 Hb_003811_030 0.1436725654 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
13 Hb_028841_020 0.1460435763 - - hypothetical protein CISIN_1g041345mg [Citrus sinensis]
14 Hb_005545_080 0.1467665134 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
15 Hb_107552_020 0.1490174766 - - Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
16 Hb_141990_050 0.1492593534 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
17 Hb_001004_010 0.1507649581 - - conserved hypothetical protein [Ricinus communis]
18 Hb_113396_020 0.1548017911 - - Mitogen-activated protein kinase kinase kinase 1 [Glycine soja]
19 Hb_097007_020 0.1549293823 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
20 Hb_001568_060 0.1580294635 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]

Gene co-expression network

sample Hb_039650_030 Hb_039650_030 Hb_000175_250 Hb_000175_250 Hb_039650_030--Hb_000175_250 Hb_004924_030 Hb_004924_030 Hb_039650_030--Hb_004924_030 Hb_000247_150 Hb_000247_150 Hb_039650_030--Hb_000247_150 Hb_006873_030 Hb_006873_030 Hb_039650_030--Hb_006873_030 Hb_035677_010 Hb_035677_010 Hb_039650_030--Hb_035677_010 Hb_007328_010 Hb_007328_010 Hb_039650_030--Hb_007328_010 Hb_000175_250--Hb_004924_030 Hb_028841_020 Hb_028841_020 Hb_000175_250--Hb_028841_020 Hb_000175_250--Hb_007328_010 Hb_012496_010 Hb_012496_010 Hb_000175_250--Hb_012496_010 Hb_141990_050 Hb_141990_050 Hb_000175_250--Hb_141990_050 Hb_005545_080 Hb_005545_080 Hb_004924_030--Hb_005545_080 Hb_000059_160 Hb_000059_160 Hb_004924_030--Hb_000059_160 Hb_000465_100 Hb_000465_100 Hb_004924_030--Hb_000465_100 Hb_004924_030--Hb_006873_030 Hb_000247_150--Hb_035677_010 Hb_013720_010 Hb_013720_010 Hb_000247_150--Hb_013720_010 Hb_000331_710 Hb_000331_710 Hb_000247_150--Hb_000331_710 Hb_097007_020 Hb_097007_020 Hb_000247_150--Hb_097007_020 Hb_000247_150--Hb_012496_010 Hb_003811_030 Hb_003811_030 Hb_006873_030--Hb_003811_030 Hb_006873_030--Hb_012496_010 Hb_113396_020 Hb_113396_020 Hb_006873_030--Hb_113396_020 Hb_006873_030--Hb_035677_010 Hb_006873_030--Hb_000247_150 Hb_035677_010--Hb_012496_010 Hb_035677_010--Hb_097007_020 Hb_000571_030 Hb_000571_030 Hb_035677_010--Hb_000571_030 Hb_035677_010--Hb_013720_010 Hb_004899_360 Hb_004899_360 Hb_035677_010--Hb_004899_360 Hb_007328_010--Hb_141990_050 Hb_009189_010 Hb_009189_010 Hb_007328_010--Hb_009189_010 Hb_000522_120 Hb_000522_120 Hb_007328_010--Hb_000522_120 Hb_001677_130 Hb_001677_130 Hb_007328_010--Hb_001677_130 Hb_002849_030 Hb_002849_030 Hb_007328_010--Hb_002849_030 Hb_073870_020 Hb_073870_020 Hb_007328_010--Hb_073870_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 24.8663 5.84224 1.41278 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0801086 0 0 0.973403 3.73992

CAGE analysis